miRNA display CGI


Results 61 - 80 of 579 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 5' -47.6 NC_001847.1 + 67206 0.66 0.999607
Target:  5'- cGCCguGCCGagCGGCGGGcgcgcGGucGAACGCCg -3'
miRNA:   3'- -CGG--UGGUa-GUCGCUU-----CUuaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 66224 0.66 0.999689
Target:  5'- gGCCGCCGcgccgaaccUCAGCGcGGc---GGCGCUc -3'
miRNA:   3'- -CGGUGGU---------AGUCGCuUCuuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 29091 0.66 0.999607
Target:  5'- uGCCGCCGgcgagcaCGGCGcGGGcgGcGCGCg -3'
miRNA:   3'- -CGGUGGUa------GUCGCuUCUuaUuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 69893 0.66 0.999607
Target:  5'- gGCCGCgGgcccgGGUGgcGGAaAAGCGCCg -3'
miRNA:   3'- -CGGUGgUag---UCGCuuCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 118722 0.66 0.999607
Target:  5'- cGUCGCCGgccucgCAGaCGcGGGAaAAGCGCUg -3'
miRNA:   3'- -CGGUGGUa-----GUC-GCuUCUUaUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 72913 0.66 0.999382
Target:  5'- cGCCACgAggcggucggCGGCGucGggUuuACGCUc -3'
miRNA:   3'- -CGGUGgUa--------GUCGCuuCuuAuuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 88239 0.66 0.999607
Target:  5'- aGCCgagGCCGgcgCGGCGcGGG----GCGCCg -3'
miRNA:   3'- -CGG---UGGUa--GUCGCuUCUuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 89594 0.66 0.999607
Target:  5'- cGCCGCCG-CGGUGAAcgcgcuGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUUcuuauuUGCGg -5'
6682 5' -47.6 NC_001847.1 + 34896 0.66 0.999689
Target:  5'- uGCCACaAUUGGCGcuuuGGggUcu-CGCCa -3'
miRNA:   3'- -CGGUGgUAGUCGCu---UCuuAuuuGCGG- -5'
6682 5' -47.6 NC_001847.1 + 60146 0.66 0.999689
Target:  5'- cCCGCCcgcCGGCGGAcuGAGccuGGCGCCc -3'
miRNA:   3'- cGGUGGua-GUCGCUU--CUUau-UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 65646 0.66 0.999382
Target:  5'- cGCCGCCAaCGGCc--GcGUGcGCGCCc -3'
miRNA:   3'- -CGGUGGUaGUCGcuuCuUAUuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 101451 0.66 0.999505
Target:  5'- cGCCGCCGcgCcGCGAGcgccu-GCGCCu -3'
miRNA:   3'- -CGGUGGUa-GuCGCUUcuuauuUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 79988 0.66 0.999505
Target:  5'- aGCCGCUgcgCGGCGGu-----GACGCCc -3'
miRNA:   3'- -CGGUGGua-GUCGCUucuuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 53939 0.66 0.999607
Target:  5'- aGCCugCAUCuacgcgcGCGccGGcu-GGCGCCg -3'
miRNA:   3'- -CGGugGUAGu------CGCuuCUuauUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 14804 0.66 0.999689
Target:  5'- aCCGCag-CGGCGGAGcugcgcGGCGCCc -3'
miRNA:   3'- cGGUGguaGUCGCUUCuuau--UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 608 0.66 0.999674
Target:  5'- gGCCGCuCcgCAGCGgcGcgcggcccGCGCCu -3'
miRNA:   3'- -CGGUG-GuaGUCGCuuCuuauu---UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 30612 0.66 0.999607
Target:  5'- gGCCGCgGcgCGGCGgcGGcugaucGUGcucGACGCCg -3'
miRNA:   3'- -CGGUGgUa-GUCGCuuCU------UAU---UUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 74695 0.66 0.999597
Target:  5'- cGCCcgACgGgggCAGCGccGAcgcgcgcGUGGACGCCg -3'
miRNA:   3'- -CGG--UGgUa--GUCGCuuCU-------UAUUUGCGG- -5'
6682 5' -47.6 NC_001847.1 + 67693 0.66 0.999658
Target:  5'- gGCauaGCUcUCGGCGAGGugcucgagcGCGCCg -3'
miRNA:   3'- -CGg--UGGuAGUCGCUUCuuauu----UGCGG- -5'
6682 5' -47.6 NC_001847.1 + 8209 0.66 0.999689
Target:  5'- aGgCGCCGUgcCAGCaGAAGcagcuGCGCCa -3'
miRNA:   3'- -CgGUGGUA--GUCG-CUUCuuauuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.