miRNA display CGI


Results 61 - 80 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 90871 0.66 0.444859
Target:  5'- cCGCCGGUGUGGuagaucgccguaaucACCgacgggggguugCCGGCCGCuagcagcaGCCGg -3'
miRNA:   3'- -GCGGUCGCGCC---------------UGG------------GGCCGGCG--------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 126547 0.66 0.432981
Target:  5'- gGCCgAGCGCcGcCCCUGGCgGgGCCu -3'
miRNA:   3'- gCGG-UCGCGcCuGGGGCCGgCgUGGu -5'
6683 3' -66.4 NC_001847.1 + 43393 0.66 0.408163
Target:  5'- gCGCCcgcggaccgaugGGCguacGCGGACCUCGcGCUGCugCu -3'
miRNA:   3'- -GCGG------------UCG----CGCCUGGGGC-CGGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 79757 0.66 0.40009
Target:  5'- gCGCCAGCGC-GAUCa--GCgGCACCAg -3'
miRNA:   3'- -GCGGUCGCGcCUGGggcCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 76569 0.66 0.441447
Target:  5'- aGCCGGCGgccCGGcCCCCGaucuucGCCGcCGCUg -3'
miRNA:   3'- gCGGUCGC---GCCuGGGGC------CGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 89967 0.66 0.42461
Target:  5'- uGCCAGCGCGcGGCggaagCGGUgcugCGCGCCGc -3'
miRNA:   3'- gCGGUCGCGC-CUGgg---GCCG----GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 114434 0.66 0.40009
Target:  5'- cCGCCAGCG-GGGCCUCGuCCucguaGCACUc -3'
miRNA:   3'- -GCGGUCGCgCCUGGGGCcGG-----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 119896 0.66 0.408163
Target:  5'- uCGCguGCGUGGccgccgccGCCgCCGGCgCGUACUu -3'
miRNA:   3'- -GCGguCGCGCC--------UGG-GGCCG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 133593 0.66 0.441447
Target:  5'- gGCCucgcGGCGCGucuucGGCCCgGGCgccuucgcgCGCGCCGa -3'
miRNA:   3'- gCGG----UCGCGC-----CUGGGgCCG---------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 96557 0.66 0.40009
Target:  5'- aGCCGcgcGCGCGGuCUgCUGGCCGUguGCCu -3'
miRNA:   3'- gCGGU---CGCGCCuGG-GGCCGGCG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 99695 0.66 0.40009
Target:  5'- gCGCgCGGCGCGGGCCgCCGuaaaGUCaGCGCg- -3'
miRNA:   3'- -GCG-GUCGCGCCUGG-GGC----CGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 64436 0.66 0.441447
Target:  5'- gCGCUcGcCGCGGgcGCCCCcGCCGcCGCCc -3'
miRNA:   3'- -GCGGuC-GCGCC--UGGGGcCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 1411 0.66 0.441447
Target:  5'- aGgCAGgcaCGCGG-CCCCGcGCCcCGCCAg -3'
miRNA:   3'- gCgGUC---GCGCCuGGGGC-CGGcGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 104035 0.66 0.423778
Target:  5'- -uCCAGCGCGcgccgcccgcaGGCCagguacaCCGGCCGCAgCGg -3'
miRNA:   3'- gcGGUCGCGC-----------CUGG-------GGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 132455 0.66 0.441447
Target:  5'- aGCUggagGGCGCGGAggacgagccgaUgCCGGCCGaGCCGc -3'
miRNA:   3'- gCGG----UCGCGCCU-----------GgGGCCGGCgUGGU- -5'
6683 3' -66.4 NC_001847.1 + 30780 0.66 0.441447
Target:  5'- gGCCucgcGGCGCGucuucGGCCCgGGCgccuucgcgCGCGCCGa -3'
miRNA:   3'- gCGG----UCGCGC-----CUGGGgCCG---------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 104045 0.66 0.441447
Target:  5'- uGCCAcCGCGcugCCCGGCCccaGCGCCGc -3'
miRNA:   3'- gCGGUcGCGCcugGGGCCGG---CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 40383 0.66 0.40009
Target:  5'- aGCggggGGCGaCGG-CCCCGGCCaagacGCGCCc -3'
miRNA:   3'- gCGg---UCGC-GCCuGGGGCCGG-----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 7445 0.66 0.421289
Target:  5'- uCGCUAGCGCGGACCUacuacaucugccagCGgaacaucgaguGCCucucaaaGCACCAg -3'
miRNA:   3'- -GCGGUCGCGCCUGGG--------------GC-----------CGG-------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 121225 0.66 0.43551
Target:  5'- aCGCCGuCGCGGgccucccggaacuccACCaggaacaCCGGgCGCACCAg -3'
miRNA:   3'- -GCGGUcGCGCC---------------UGG-------GGCCgGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.