miRNA display CGI


Results 101 - 120 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 14438 0.66 0.40009
Target:  5'- uGCCucgacGGCGCcggGGugCgCGGCCGCgGCCu -3'
miRNA:   3'- gCGG-----UCGCG---CCugGgGCCGGCG-UGGu -5'
6683 3' -66.4 NC_001847.1 + 64436 0.66 0.441447
Target:  5'- gCGCUcGcCGCGGgcGCCCCcGCCGcCGCCc -3'
miRNA:   3'- -GCGGuC-GCGCC--UGGGGcCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 99445 0.66 0.432981
Target:  5'- gCGCCAGCGUGGGagUUGcGCagCGCGCCGc -3'
miRNA:   3'- -GCGGUCGCGCCUggGGC-CG--GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 127393 0.66 0.408163
Target:  5'- cCGUCGG-GCuuGCCCUGGCCGcCGCCu -3'
miRNA:   3'- -GCGGUCgCGccUGGGGCCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 14401 0.66 0.408163
Target:  5'- aGCUGGCGuCGaGGCCCCGcUCGCAgCGg -3'
miRNA:   3'- gCGGUCGC-GC-CUGGGGCcGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 43393 0.66 0.408163
Target:  5'- gCGCCcgcggaccgaugGGCguacGCGGACCUCGcGCUGCugCu -3'
miRNA:   3'- -GCGG------------UCG----CGCCUGGGGC-CGGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 33890 0.66 0.432981
Target:  5'- cCGCC-GCGCGuGGCCgCGGgCGUGCa- -3'
miRNA:   3'- -GCGGuCGCGC-CUGGgGCCgGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 84143 0.66 0.42461
Target:  5'- aGCUGGCGUGGuccguaaucgcGCgCUCGaGCUGCGCCGc -3'
miRNA:   3'- gCGGUCGCGCC-----------UG-GGGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 46925 0.66 0.42461
Target:  5'- gCGUCgGGCcCGGGCUCCgGGCCGCgugcggcgaaGCCAa -3'
miRNA:   3'- -GCGG-UCGcGCCUGGGG-CCGGCG----------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 20087 0.66 0.430459
Target:  5'- cCG-CGGCGCGGcccggccaucgcuaGCCCgUGGCCGC-CCu -3'
miRNA:   3'- -GCgGUCGCGCC--------------UGGG-GCCGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 132543 0.66 0.441447
Target:  5'- -uCCGGCGCGGcggGCUCgcgugCGGCCGCGgCGg -3'
miRNA:   3'- gcGGUCGCGCC---UGGG-----GCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 40383 0.66 0.40009
Target:  5'- aGCggggGGCGaCGG-CCCCGGCCaagacGCGCCc -3'
miRNA:   3'- gCGg---UCGC-GCCuGGGGCCGG-----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 3809 0.66 0.441447
Target:  5'- uGCCGGCaCgGGGCgUCGGCCGCGa-- -3'
miRNA:   3'- gCGGUCGcG-CCUGgGGCCGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 58560 0.66 0.416337
Target:  5'- cCGCCAGCgGCGGcgaagaucgggGgCCgGGCCGCcgGCUg -3'
miRNA:   3'- -GCGGUCG-CGCC-----------UgGGgCCGGCG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 53780 0.66 0.40009
Target:  5'- aGCuaugCAGCGUGGGCCaguaCCuGCCGCACg- -3'
miRNA:   3'- gCG----GUCGCGCCUGG----GGcCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 79757 0.66 0.40009
Target:  5'- gCGCCAGCGC-GAUCa--GCgGCACCAg -3'
miRNA:   3'- -GCGGUCGCGcCUGGggcCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 102078 0.66 0.432981
Target:  5'- gGCaGGCGCGGGCcgcgcgcgaCCCGGUCaauaaacuccuGCGCCGc -3'
miRNA:   3'- gCGgUCGCGCCUG---------GGGCCGG-----------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 30432 0.66 0.40009
Target:  5'- gGCgGGCGCGGagGCgCCggGGCUGCACgAg -3'
miRNA:   3'- gCGgUCGCGCC--UGgGG--CCGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 27184 0.66 0.40009
Target:  5'- uGUCGGCGgGGugCUucagcguuaggaCGGgCGCGCCGg -3'
miRNA:   3'- gCGGUCGCgCCugGG------------GCCgGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 64870 0.66 0.407351
Target:  5'- cCGCCAgGCGCGcGuCCUCGcgguacagcgagaGCgGCACCAg -3'
miRNA:   3'- -GCGGU-CGCGC-CuGGGGC-------------CGgCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.