miRNA display CGI


Results 121 - 140 of 884 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 59499 0.66 0.40009
Target:  5'- aCGCCcGCGCcuccGGCUCCGGCauCGCCGu -3'
miRNA:   3'- -GCGGuCGCGc---CUGGGGCCGgcGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 121991 0.66 0.42461
Target:  5'- uGCCAGCaGCccaACCgCCGGCCGCGg-- -3'
miRNA:   3'- gCGGUCG-CGcc-UGG-GGCCGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 10625 0.66 0.42461
Target:  5'- uGCUGGCGCuGGuCCuCCGGCUccuCGCCGg -3'
miRNA:   3'- gCGGUCGCG-CCuGG-GGCCGGc--GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 18781 0.67 0.384254
Target:  5'- gGCCgacAGCGCGaGCUCCgcggcggcGGCgCGCGCCAg -3'
miRNA:   3'- gCGG---UCGCGCcUGGGG--------CCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 74022 0.67 0.353853
Target:  5'- gCGCCGGCGCGuGCCgCUGGCggacgugGCGCUg -3'
miRNA:   3'- -GCGGUCGCGCcUGG-GGCCGg------CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 131856 0.67 0.383473
Target:  5'- uCGCCgAGCuGCGcGCCgugcucgCCGGCCGCGCg- -3'
miRNA:   3'- -GCGG-UCG-CGCcUGG-------GGCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 19397 0.67 0.384254
Target:  5'- aGCCGGUGUGuGugCCCauGGCCaccagcGCGCCc -3'
miRNA:   3'- gCGGUCGCGC-CugGGG--CCGG------CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 34544 0.67 0.376493
Target:  5'- cCGCCgGGCGCuugGGGCCacaGGCCGCcaagcugcacGCCGa -3'
miRNA:   3'- -GCGG-UCGCG---CCUGGgg-CCGGCG----------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 53848 0.67 0.376493
Target:  5'- gCGgCGGCGCuGGcgGCgCUGGCgGCGCCGa -3'
miRNA:   3'- -GCgGUCGCG-CC--UGgGGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 67307 0.67 0.383473
Target:  5'- gCGCCAGCGcCGGcaGCCCCGccggcguauagguGCagcaGCAUCGc -3'
miRNA:   3'- -GCGGUCGC-GCC--UGGGGC-------------CGg---CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 84621 0.67 0.384254
Target:  5'- uCGCCuucgAGCGgGGccauGCCgCGGCUGCugCGc -3'
miRNA:   3'- -GCGG----UCGCgCC----UGGgGCCGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 118301 0.67 0.353853
Target:  5'- uCGCCucgAGCGCc-GCCCCGaugcCCGCGCCAc -3'
miRNA:   3'- -GCGG---UCGCGccUGGGGCc---GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 129746 0.67 0.379585
Target:  5'- aGCCAGCGgGGACgaaggagcagaaagCCGGCCa-GCCAg -3'
miRNA:   3'- gCGGUCGCgCCUGg-------------GGCCGGcgUGGU- -5'
6683 3' -66.4 NC_001847.1 + 13117 0.67 0.353853
Target:  5'- gGCCGgggcGCGCGGGCggcgCCGcGCCGCcuGCCGc -3'
miRNA:   3'- gCGGU----CGCGCCUGg---GGC-CGGCG--UGGU- -5'
6683 3' -66.4 NC_001847.1 + 60639 0.67 0.353853
Target:  5'- uCGuCCAGCGCGcGGCgCaggcgCGGCUGCugCAu -3'
miRNA:   3'- -GC-GGUCGCGC-CUGgG-----GCCGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 107195 0.67 0.376493
Target:  5'- cCGCgAGCGCGcGcGCCgCGGCCcagGCGCUg -3'
miRNA:   3'- -GCGgUCGCGC-C-UGGgGCCGG---CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 36141 0.67 0.384254
Target:  5'- gCGCCgcGGaCGCGGGCCUgcagCGGCUGCAg-- -3'
miRNA:   3'- -GCGG--UC-GCGCCUGGG----GCCGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 8611 0.67 0.384254
Target:  5'- aGCCgcAGCGCaaGCCCCgccgggggagcGGCCGCugCGg -3'
miRNA:   3'- gCGG--UCGCGccUGGGG-----------CCGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 81389 0.67 0.384254
Target:  5'- uCGCC-GCcuCGGGCCgCCGGauCCGCGCUAc -3'
miRNA:   3'- -GCGGuCGc-GCCUGG-GGCC--GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 7832 0.67 0.384254
Target:  5'- gCGCCGGuCGCcgugucuccGGcACCgCCGGUgGCGCCu -3'
miRNA:   3'- -GCGGUC-GCG---------CC-UGG-GGCCGgCGUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.