miRNA display CGI


Results 141 - 160 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 58814 0.67 0.366563
Target:  5'- gCGCCGGCGCcuGGGCCggugcgagggUCGGCacuugggccgggccCGCACCu -3'
miRNA:   3'- -GCGGUCGCG--CCUGG----------GGCCG--------------GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 85902 0.67 0.361292
Target:  5'- uCGCCGGCGCc-ACCCCG-CCguuugcguggaGCACCAa -3'
miRNA:   3'- -GCGGUCGCGccUGGGGCcGG-----------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 102704 0.67 0.362041
Target:  5'- gCGCCGGgcggGCGGcgaaaggcccgcaccCCCCGGCUGCcCCAa -3'
miRNA:   3'- -GCGGUCg---CGCCu--------------GGGGCCGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 132057 0.67 0.376493
Target:  5'- uGCCGGcCGCGGccugcGCgCCGGaCGCGCUg -3'
miRNA:   3'- gCGGUC-GCGCC-----UGgGGCCgGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 36141 0.67 0.384254
Target:  5'- gCGCCgcGGaCGCGGGCCUgcagCGGCUGCAg-- -3'
miRNA:   3'- -GCGG--UC-GCGCCUGGG----GCCGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 133255 0.67 0.346523
Target:  5'- gCGCUcgcGGCGCuGGGCaaCCGGCUGCugCu -3'
miRNA:   3'- -GCGG---UCGCG-CCUGg-GGCCGGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 75702 0.67 0.346523
Target:  5'- aGCC-GCuCGGGCCaCgGGCCGCggGCCGc -3'
miRNA:   3'- gCGGuCGcGCCUGG-GgCCGGCG--UGGU- -5'
6683 3' -66.4 NC_001847.1 + 36012 0.67 0.346523
Target:  5'- cCGCgGGCGUGGugCUgGGgCUGCGCgCGg -3'
miRNA:   3'- -GCGgUCGCGCCugGGgCC-GGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 23832 0.67 0.346523
Target:  5'- gGuCCAGCGCGcgcacGGCCCCGaGCCgGCugGCCu -3'
miRNA:   3'- gC-GGUCGCGC-----CUGGGGC-CGG-CG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 18448 0.67 0.346523
Target:  5'- gGCCAGCcguGCGGugCCgCGcCCGCAgCGc -3'
miRNA:   3'- gCGGUCG---CGCCugGG-GCcGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 13299 0.67 0.346523
Target:  5'- gCGCUA-CGCGGGCgCCgGGCUGCagucgGCCGa -3'
miRNA:   3'- -GCGGUcGCGCCUG-GGgCCGGCG-----UGGU- -5'
6683 3' -66.4 NC_001847.1 + 107195 0.67 0.376493
Target:  5'- cCGCgAGCGCGcGcGCCgCGGCCcagGCGCUg -3'
miRNA:   3'- -GCGgUCGCGC-C-UGGgGCCGG---CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 14150 0.67 0.39212
Target:  5'- gCGCCuGgGCGGccGCUagggcgaCGGCCGCGCUu -3'
miRNA:   3'- -GCGGuCgCGCC--UGGg------GCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 40769 0.67 0.39212
Target:  5'- gCGUCAcgugcGCGCGGcagACgCC-GCCGCGCCAg -3'
miRNA:   3'- -GCGGU-----CGCGCC---UGgGGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 133209 0.67 0.384254
Target:  5'- gCGCCGGCGgcccgaGuGGCCgCCGcGCCGCGgCGg -3'
miRNA:   3'- -GCGGUCGCg-----C-CUGG-GGC-CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 116954 0.67 0.39212
Target:  5'- uGCCuG-GCGGugCuCCGGCUGC-CCu -3'
miRNA:   3'- gCGGuCgCGCCugG-GGCCGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 131856 0.67 0.383473
Target:  5'- uCGCCgAGCuGCGcGCCgugcucgCCGGCCGCGCg- -3'
miRNA:   3'- -GCGG-UCG-CGCcUGG-------GGCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 19397 0.67 0.384254
Target:  5'- aGCCGGUGUGuGugCCCauGGCCaccagcGCGCCc -3'
miRNA:   3'- gCGGUCGCGC-CugGGG--CCGG------CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 7832 0.67 0.384254
Target:  5'- gCGCCGGuCGCcgugucuccGGcACCgCCGGUgGCGCCu -3'
miRNA:   3'- -GCGGUC-GCG---------CC-UGG-GGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 31889 0.67 0.361292
Target:  5'- aGCCcgucGCGCGGAUgCCgccgcagaucacGGCCGCgGCCGc -3'
miRNA:   3'- gCGGu---CGCGCCUGgGG------------CCGGCG-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.