miRNA display CGI


Results 81 - 100 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 107144 0.74 0.116942
Target:  5'- cCGCUucGGcCGCGGccgccuccGCCCCGGCCGCgGCCGc -3'
miRNA:   3'- -GCGG--UC-GCGCC--------UGGGGCCGGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 87409 0.74 0.122823
Target:  5'- gCGCgGGCG-GGGCCCCGcccGCCGCGCUc -3'
miRNA:   3'- -GCGgUCGCgCCUGGGGC---CGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 32254 0.74 0.135416
Target:  5'- aGcCCAGaGCGGGCCCgGGCCcgccGCGCCGa -3'
miRNA:   3'- gC-GGUCgCGCCUGGGgCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 101481 0.74 0.132161
Target:  5'- aGCCccGCGCGGGCCgCGGCCacgcgcgcgcGCGCCu -3'
miRNA:   3'- gCGGu-CGCGCCUGGgGCCGG----------CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 73011 0.74 0.132161
Target:  5'- gCGCgGGCGCGGAaCCaGGCCGCGgCAg -3'
miRNA:   3'- -GCGgUCGCGCCUgGGgCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 21722 0.74 0.132161
Target:  5'- gCGCCagcagGGCGCGGGCCggcgCCGGCCcGCGCg- -3'
miRNA:   3'- -GCGG-----UCGCGCCUGG----GGCCGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 69627 0.74 0.132161
Target:  5'- gGUgAGCGCGGAgagcgcgagUCCCaGCCGCGCCGc -3'
miRNA:   3'- gCGgUCGCGCCU---------GGGGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 4221 0.74 0.125865
Target:  5'- aGCCcuGCGCGGugC-CGGCgCGCGCCGg -3'
miRNA:   3'- gCGGu-CGCGCCugGgGCCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 102951 0.74 0.119849
Target:  5'- cCGCgGGCcuCGGGCCCCGGCCGggggGCCGg -3'
miRNA:   3'- -GCGgUCGc-GCCUGGGGCCGGCg---UGGU- -5'
6683 3' -66.4 NC_001847.1 + 105748 0.74 0.12103
Target:  5'- cCGCCAGCGCGGccGCCUccagcgcggCGGCCGCcucggcggcagcgccGCCGg -3'
miRNA:   3'- -GCGGUCGCGCC--UGGG---------GCCGGCG---------------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 135067 0.74 0.135416
Target:  5'- aGcCCAGaGCGGGCCCgGGCCcgccGCGCCGa -3'
miRNA:   3'- gC-GGUCgCGCCUGGGgCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 124535 0.74 0.132161
Target:  5'- gCGCCagcagGGCGCGGGCCggcgCCGGCCcGCGCg- -3'
miRNA:   3'- -GCGG-----UCGCGCCUGG----GGCCGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 60867 0.74 0.132161
Target:  5'- gCGuCCAGCGCGGGg--CGGCCGCGCCc -3'
miRNA:   3'- -GC-GGUCGCGCCUgggGCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 88448 0.74 0.128978
Target:  5'- gCGUgGGcCGCGGGCCCCGaCCGCGCg- -3'
miRNA:   3'- -GCGgUC-GCGCCUGGGGCcGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 34763 0.74 0.128978
Target:  5'- aGCUGGCGCGGcugcgcGCCgCGGCCGCGgCGc -3'
miRNA:   3'- gCGGUCGCGCC------UGGgGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 126674 0.74 0.125865
Target:  5'- gGCCgAGCGCcGcCCCCGGCCcgGCGCCGc -3'
miRNA:   3'- gCGG-UCGCGcCuGGGGCCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 134511 0.74 0.124032
Target:  5'- gGCCucgggggcggggggaGGCGCGGGCCgCGcGCCGCugCGg -3'
miRNA:   3'- gCGG---------------UCGCGCCUGGgGC-CGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 113511 0.74 0.122823
Target:  5'- gCGCCcgGGCGCGGcccGCgCCGGCCaaGCGCCGc -3'
miRNA:   3'- -GCGG--UCGCGCC---UGgGGCCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 28856 0.74 0.122823
Target:  5'- gGCCGcGCGCGcGACgCCGGCgGCGCUg -3'
miRNA:   3'- gCGGU-CGCGC-CUGgGGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 113391 0.74 0.12103
Target:  5'- gCGCCGgcggcccccccgcgcGCGCGGGCCggcgCCGGcCCGCGCCc -3'
miRNA:   3'- -GCGGU---------------CGCGCCUGG----GGCC-GGCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.