miRNA display CGI


Results 101 - 120 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 134511 0.74 0.124032
Target:  5'- gGCCucgggggcggggggaGGCGCGGGCCgCGcGCCGCugCGg -3'
miRNA:   3'- gCGG---------------UCGCGCCUGGgGC-CGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 49477 0.74 0.122823
Target:  5'- gCGCCuGCGC--GCCagcaCGGCCGCGCCAa -3'
miRNA:   3'- -GCGGuCGCGccUGGg---GCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 87409 0.74 0.122823
Target:  5'- gCGCgGGCG-GGGCCCCGcccGCCGCGCUc -3'
miRNA:   3'- -GCGgUCGCgCCUGGGGC---CGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 113391 0.74 0.12103
Target:  5'- gCGCCGgcggcccccccgcgcGCGCGGGCCggcgCCGGcCCGCGCCc -3'
miRNA:   3'- -GCGGU---------------CGCGCCUGG----GGCC-GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 105748 0.74 0.12103
Target:  5'- cCGCCAGCGCGGccGCCUccagcgcggCGGCCGCcucggcggcagcgccGCCGg -3'
miRNA:   3'- -GCGGUCGCGCC--UGGG---------GCCGGCG---------------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 102951 0.74 0.119849
Target:  5'- cCGCgGGCcuCGGGCCCCGGCCGggggGCCGg -3'
miRNA:   3'- -GCGgUCGc-GCCUGGGGCCGGCg---UGGU- -5'
6683 3' -66.4 NC_001847.1 + 46601 0.74 0.116942
Target:  5'- cCGCCGGCGCGG-CCUCGcGgCGCACgAg -3'
miRNA:   3'- -GCGGUCGCGCCuGGGGC-CgGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 60867 0.74 0.132161
Target:  5'- gCGuCCAGCGCGGGg--CGGCCGCGCCc -3'
miRNA:   3'- -GC-GGUCGCGCCUgggGCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 124535 0.74 0.132161
Target:  5'- gCGCCagcagGGCGCGGGCCggcgCCGGCCcGCGCg- -3'
miRNA:   3'- -GCGG-----UCGCGCCUGG----GGCCGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 113511 0.74 0.122823
Target:  5'- gCGCCcgGGCGCGGcccGCgCCGGCCaaGCGCCGc -3'
miRNA:   3'- -GCGG--UCGCGCC---UGgGGCCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 103223 0.74 0.132161
Target:  5'- cCGCC-GCGCGaGCCgCGGCCGCGgCCGu -3'
miRNA:   3'- -GCGGuCGCGCcUGGgGCCGGCGU-GGU- -5'
6683 3' -66.4 NC_001847.1 + 107144 0.74 0.116942
Target:  5'- cCGCUucGGcCGCGGccgccuccGCCCCGGCCGCgGCCGc -3'
miRNA:   3'- -GCGG--UC-GCGCC--------UGGGGCCGGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 44258 0.74 0.135416
Target:  5'- gCGCCGGCGacugggcaaCGG-CCCCGGCCucgaCACCAg -3'
miRNA:   3'- -GCGGUCGC---------GCCuGGGGCCGGc---GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 135067 0.74 0.135416
Target:  5'- aGcCCAGaGCGGGCCCgGGCCcgccGCGCCGa -3'
miRNA:   3'- gC-GGUCgCGCCUGGGgCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 103104 0.73 0.14563
Target:  5'- aGCCcGCGCGGGCgCCGuccCCGCGCCc -3'
miRNA:   3'- gCGGuCGCGCCUGgGGCc--GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 57088 0.73 0.149188
Target:  5'- gGCCAGCGCugcgcuGGACCgCCGcgccGCCGCGCgCAu -3'
miRNA:   3'- gCGGUCGCG------CCUGG-GGC----CGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 52284 0.73 0.143533
Target:  5'- gCGCCGGCuuugugugcgcgaccGCGGGCgCgGGCgGCGCCAa -3'
miRNA:   3'- -GCGGUCG---------------CGCCUGgGgCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 126914 0.73 0.149188
Target:  5'- aGCUGGCGCGGGuCCCagGGCuCGCACUc -3'
miRNA:   3'- gCGGUCGCGCCU-GGGg-CCG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 89290 0.73 0.14215
Target:  5'- gCGCCgcGGC-CGaGGCCUCGGCCGUGCCGc -3'
miRNA:   3'- -GCGG--UCGcGC-CUGGGGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 84629 0.73 0.14215
Target:  5'- gGuCCAGCGCGaACuCCUGGcCCGCGCCGu -3'
miRNA:   3'- gC-GGUCGCGCcUG-GGGCC-GGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.