miRNA display CGI


Results 121 - 140 of 884 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 52284 0.73 0.143533
Target:  5'- gCGCCGGCuuugugugcgcgaccGCGGGCgCgGGCgGCGCCAa -3'
miRNA:   3'- -GCGGUCG---------------CGCCUGgGgCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 103104 0.73 0.14563
Target:  5'- aGCCcGCGCGGGCgCCGuccCCGCGCCc -3'
miRNA:   3'- gCGGuCGCGCCUGgGGCc--GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 89290 0.73 0.14215
Target:  5'- gCGCCgcGGC-CGaGGCCUCGGCCGUGCCGc -3'
miRNA:   3'- -GCGG--UCGcGC-CUGGGGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 291 0.73 0.14563
Target:  5'- aGCCcGCGCGGGCgCCGuccCCGCGCCc -3'
miRNA:   3'- gCGGuCGCGCCUGgGGCc--GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 79222 0.73 0.152458
Target:  5'- aCGCCGGcCGCGGAucacgggcgcgcuCCCCGaGCUGCuaGCCGg -3'
miRNA:   3'- -GCGGUC-GCGCCU-------------GGGGC-CGGCG--UGGU- -5'
6683 3' -66.4 NC_001847.1 + 61420 0.73 0.160341
Target:  5'- aGCCGGCccuCGacGCCCgCGGCCGCGCCGc -3'
miRNA:   3'- gCGGUCGc--GCc-UGGG-GCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 34496 0.73 0.160341
Target:  5'- cCGCagCAGCGCGG-CCCUGGCgcCGCAgCCAg -3'
miRNA:   3'- -GCG--GUCGCGCCuGGGGCCG--GCGU-GGU- -5'
6683 3' -66.4 NC_001847.1 + 61627 0.73 0.159957
Target:  5'- aGCCGGCucaugcaGCGGuCCuuGGCCGaCACCu -3'
miRNA:   3'- gCGGUCG-------CGCCuGGggCCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 89684 0.73 0.159192
Target:  5'- gGCCGaggacccgggguauGCGCGGGCCCauGCCGUGCCc -3'
miRNA:   3'- gCGGU--------------CGCGCCUGGGgcCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 35311 0.73 0.158051
Target:  5'- gGCgGGCaacgcaaagcacuaaGCGGcCCCCGGCCGCuCCGa -3'
miRNA:   3'- gCGgUCG---------------CGCCuGGGGCCGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 40916 0.73 0.156542
Target:  5'- gGCCcGCGCGGgcGCCCCGccgcgagcuccGCCGCGCgCAg -3'
miRNA:   3'- gCGGuCGCGCC--UGGGGC-----------CGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 121717 0.73 0.156542
Target:  5'- aGCCAGCGCaGGCCCCGcuccGCgaGCGCUAc -3'
miRNA:   3'- gCGGUCGCGcCUGGGGC----CGg-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 130952 0.73 0.152825
Target:  5'- uGCCuGCGCGcGGCCCaCGGgCGCGCg- -3'
miRNA:   3'- gCGGuCGCGC-CUGGG-GCCgGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 49594 0.73 0.152825
Target:  5'- gCGCCugGGCGCagcgGGAgCUCGGCgCGCGCCAc -3'
miRNA:   3'- -GCGG--UCGCG----CCUgGGGCCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 128382 0.73 0.152825
Target:  5'- aGCUGGCGCcucGCaCCGGCCGCACCGc -3'
miRNA:   3'- gCGGUCGCGcc-UGgGGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 98160 0.73 0.149188
Target:  5'- cCGCuCGGCGCGGGCCcgcucgCCGGCgccCGCGCUg -3'
miRNA:   3'- -GCG-GUCGCGCCUGG------GGCCG---GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 131667 0.73 0.149188
Target:  5'- cCGCCGGuCGgGGACgCCaUGGCCGCGCa- -3'
miRNA:   3'- -GCGGUC-GCgCCUG-GG-GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 924 0.73 0.149188
Target:  5'- cCGCCGGCGcCGGGaagCCCGaGcCCGCGCCc -3'
miRNA:   3'- -GCGGUCGC-GCCUg--GGGC-C-GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 48620 0.73 0.149188
Target:  5'- cCGCCAGCacGCGGGCgCCCagccGCCGCGCg- -3'
miRNA:   3'- -GCGGUCG--CGCCUG-GGGc---CGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 24101 0.73 0.149188
Target:  5'- aGCUGGCGCGGGuCCCagGGCuCGCACUc -3'
miRNA:   3'- gCGGUCGCGCCU-GGGg-CCG-GCGUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.