miRNA display CGI


Results 141 - 160 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 33670 0.73 0.138746
Target:  5'- uCGCUAGCGCGccGCCCuugCGGCCGCGCg- -3'
miRNA:   3'- -GCGGUCGCGCc-UGGG---GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 131667 0.73 0.149188
Target:  5'- cCGCCGGuCGgGGACgCCaUGGCCGCGCa- -3'
miRNA:   3'- -GCGGUC-GCgCCUG-GG-GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 89290 0.73 0.14215
Target:  5'- gCGCCgcGGC-CGaGGCCUCGGCCGUGCCGc -3'
miRNA:   3'- -GCGG--UCGcGC-CUGGGGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 79222 0.73 0.152458
Target:  5'- aCGCCGGcCGCGGAucacgggcgcgcuCCCCGaGCUGCuaGCCGg -3'
miRNA:   3'- -GCGGUC-GCGCCU-------------GGGGC-CGGCG--UGGU- -5'
6683 3' -66.4 NC_001847.1 + 102783 0.73 0.152825
Target:  5'- aCGCCGGCGCcccccgcgcggGGGCUgggcccccuCCGcGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCGCG-----------CCUGG---------GGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 72036 0.73 0.156166
Target:  5'- uGCgCGGCgGCGG-CCCCGGggcguacccggucCCGCACCAu -3'
miRNA:   3'- gCG-GUCG-CGCCuGGGGCC-------------GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 56829 0.73 0.156542
Target:  5'- gGCCcgcGGCGCGcGCgCCGcGCCGCGCCGu -3'
miRNA:   3'- gCGG---UCGCGCcUGgGGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 37226 0.73 0.160341
Target:  5'- gCGgCGGCGCGGACgaCCCGGCggacggCGCGCUg -3'
miRNA:   3'- -GCgGUCGCGCCUG--GGGCCG------GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 51150 0.73 0.160341
Target:  5'- uCGCUGGCGCuGGACCCguacucgaCGGCCGUuuGCCc -3'
miRNA:   3'- -GCGGUCGCG-CCUGGG--------GCCGGCG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 85979 0.73 0.160341
Target:  5'- aCGcCCGGCGCGuGACCgUGGUccgCGCGCCGa -3'
miRNA:   3'- -GC-GGUCGCGC-CUGGgGCCG---GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 77470 0.72 0.180604
Target:  5'- gGCgGGCGcCGGGCgCCCGGCCcggccCGCCGg -3'
miRNA:   3'- gCGgUCGC-GCCUG-GGGCCGGc----GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 77577 0.72 0.180604
Target:  5'- gGCC-GCGCGGGCCgagcucgcaCGGCgGCACCc -3'
miRNA:   3'- gCGGuCGCGCCUGGg--------GCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 45521 0.72 0.180604
Target:  5'- cCGCCgggcGGCGCGGACggggCCGuGCCGCGCa- -3'
miRNA:   3'- -GCGG----UCGCGCCUGg---GGC-CGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 133640 0.72 0.184485
Target:  5'- cCGCCuacGCGCGGcucuACCCCGaggcgccGCCGCugCGg -3'
miRNA:   3'- -GCGGu--CGCGCC----UGGGGC-------CGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 101563 0.72 0.18492
Target:  5'- gGCC-GC-CGaGCCCgGGCCGCGCCAg -3'
miRNA:   3'- gCGGuCGcGCcUGGGgCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 18408 0.72 0.180604
Target:  5'- aGCaCAGCGCGGcgugcaggGCCuuGGCCacguGCGCCGc -3'
miRNA:   3'- gCG-GUCGCGCC--------UGGggCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 132224 0.72 0.176378
Target:  5'- gCGCUggcGGCGCGGACCgUGGCCcCGCUc -3'
miRNA:   3'- -GCGG---UCGCGCCUGGgGCCGGcGUGGu -5'
6683 3' -66.4 NC_001847.1 + 65254 0.72 0.176378
Target:  5'- cCGCCAcC-CGGGCCCgCGGCCGguCCGc -3'
miRNA:   3'- -GCGGUcGcGCCUGGG-GCCGGCguGGU- -5'
6683 3' -66.4 NC_001847.1 + 74482 0.72 0.180604
Target:  5'- uGCCgcgagGGCGCGGACg-CGGCCGCGCgCAc -3'
miRNA:   3'- gCGG-----UCGCGCCUGggGCCGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 52684 0.72 0.180604
Target:  5'- gGCCGGgGcCGGGCCC--GCCGCGCCu -3'
miRNA:   3'- gCGGUCgC-GCCUGGGgcCGGCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.