miRNA display CGI


Results 101 - 120 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 34763 0.74 0.128978
Target:  5'- aGCUGGCGCGGcugcgcGCCgCGGCCGCGgCGc -3'
miRNA:   3'- gCGGUCGCGCC------UGGgGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 75277 0.74 0.128978
Target:  5'- gGCCGcGCGCGcGGCCCuCGGCgacCGCGCCu -3'
miRNA:   3'- gCGGU-CGCGC-CUGGG-GCCG---GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 88448 0.74 0.128978
Target:  5'- gCGUgGGcCGCGGGCCCCGaCCGCGCg- -3'
miRNA:   3'- -GCGgUC-GCGCCUGGGGCcGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 124535 0.74 0.132161
Target:  5'- gCGCCagcagGGCGCGGGCCggcgCCGGCCcGCGCg- -3'
miRNA:   3'- -GCGG-----UCGCGCCUGG----GGCCGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 103223 0.74 0.132161
Target:  5'- cCGCC-GCGCGaGCCgCGGCCGCGgCCGu -3'
miRNA:   3'- -GCGGuCGCGCcUGGgGCCGGCGU-GGU- -5'
6683 3' -66.4 NC_001847.1 + 60867 0.74 0.132161
Target:  5'- gCGuCCAGCGCGGGg--CGGCCGCGCCc -3'
miRNA:   3'- -GC-GGUCGCGCCUgggGCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 101481 0.74 0.132161
Target:  5'- aGCCccGCGCGGGCCgCGGCCacgcgcgcgcGCGCCu -3'
miRNA:   3'- gCGGu-CGCGCCUGGgGCCGG----------CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 73011 0.74 0.132161
Target:  5'- gCGCgGGCGCGGAaCCaGGCCGCGgCAg -3'
miRNA:   3'- -GCGgUCGCGCCUgGGgCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 69627 0.74 0.132161
Target:  5'- gGUgAGCGCGGAgagcgcgagUCCCaGCCGCGCCGc -3'
miRNA:   3'- gCGgUCGCGCCU---------GGGGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 21722 0.74 0.132161
Target:  5'- gCGCCagcagGGCGCGGGCCggcgCCGGCCcGCGCg- -3'
miRNA:   3'- -GCGG-----UCGCGCCUGG----GGCCGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 44258 0.74 0.135416
Target:  5'- gCGCCGGCGacugggcaaCGG-CCCCGGCCucgaCACCAg -3'
miRNA:   3'- -GCGGUCGC---------GCCuGGGGCCGGc---GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 32254 0.74 0.135416
Target:  5'- aGcCCAGaGCGGGCCCgGGCCcgccGCGCCGa -3'
miRNA:   3'- gC-GGUCgCGCCUGGGgCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 135067 0.74 0.135416
Target:  5'- aGcCCAGaGCGGGCCCgGGCCcgccGCGCCGa -3'
miRNA:   3'- gC-GGUCgCGCCUGGGgCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 121006 0.74 0.135416
Target:  5'- cCGCCcaGGCGCGGGCCCCG-CC-CAUCGc -3'
miRNA:   3'- -GCGG--UCGCGCCUGGGGCcGGcGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 38518 0.73 0.138746
Target:  5'- uCGCCGGCGCuGugCuCUGGCCGUACa- -3'
miRNA:   3'- -GCGGUCGCGcCugG-GGCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 33670 0.73 0.138746
Target:  5'- uCGCUAGCGCGccGCCCuugCGGCCGCGCg- -3'
miRNA:   3'- -GCGGUCGCGCc-UGGG---GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 100883 0.73 0.138746
Target:  5'- cCGCCGcGCGcCGGucugcGCCUCGcGCCGCGCCGc -3'
miRNA:   3'- -GCGGU-CGC-GCC-----UGGGGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 40069 0.73 0.14215
Target:  5'- aCGCCAGCGCcucuaauugcACCCCuuGCCGCGCCGg -3'
miRNA:   3'- -GCGGUCGCGcc--------UGGGGc-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 84629 0.73 0.14215
Target:  5'- gGuCCAGCGCGaACuCCUGGcCCGCGCCGu -3'
miRNA:   3'- gC-GGUCGCGCcUG-GGGCC-GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 89290 0.73 0.14215
Target:  5'- gCGCCgcGGC-CGaGGCCUCGGCCGUGCCGc -3'
miRNA:   3'- -GCGG--UCGcGC-CUGGGGCCGGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.