miRNA display CGI


Results 121 - 140 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 52284 0.73 0.143533
Target:  5'- gCGCCGGCuuugugugcgcgaccGCGGGCgCgGGCgGCGCCAa -3'
miRNA:   3'- -GCGGUCG---------------CGCCUGgGgCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 291 0.73 0.14563
Target:  5'- aGCCcGCGCGGGCgCCGuccCCGCGCCc -3'
miRNA:   3'- gCGGuCGCGCCUGgGGCc--GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 103104 0.73 0.14563
Target:  5'- aGCCcGCGCGGGCgCCGuccCCGCGCCc -3'
miRNA:   3'- gCGGuCGCGCCUGgGGCc--GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 98160 0.73 0.149188
Target:  5'- cCGCuCGGCGCGGGCCcgcucgCCGGCgccCGCGCUg -3'
miRNA:   3'- -GCG-GUCGCGCCUGG------GGCCG---GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 28854 0.73 0.149188
Target:  5'- cCGCCGGuCGgGGACgCCaUGGCCGCGCa- -3'
miRNA:   3'- -GCGGUC-GCgCCUG-GG-GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 48620 0.73 0.149188
Target:  5'- cCGCCAGCacGCGGGCgCCCagccGCCGCGCg- -3'
miRNA:   3'- -GCGGUCG--CGCCUG-GGGc---CGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 24101 0.73 0.149188
Target:  5'- aGCUGGCGCGGGuCCCagGGCuCGCACUc -3'
miRNA:   3'- gCGGUCGCGCCU-GGGg-CCG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 126914 0.73 0.149188
Target:  5'- aGCUGGCGCGGGuCCCagGGCuCGCACUc -3'
miRNA:   3'- gCGGUCGCGCCU-GGGg-CCG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 924 0.73 0.149188
Target:  5'- cCGCCGGCGcCGGGaagCCCGaGcCCGCGCCc -3'
miRNA:   3'- -GCGGUCGC-GCCUg--GGGC-C-GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 103737 0.73 0.149188
Target:  5'- cCGCCGGCGcCGGGaagCCCGaGcCCGCGCCc -3'
miRNA:   3'- -GCGGUCGC-GCCUg--GGGC-C-GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 57088 0.73 0.149188
Target:  5'- gGCCAGCGCugcgcuGGACCgCCGcgccGCCGCGCgCAu -3'
miRNA:   3'- gCGGUCGCG------CCUGG-GGC----CGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 131667 0.73 0.149188
Target:  5'- cCGCCGGuCGgGGACgCCaUGGCCGCGCa- -3'
miRNA:   3'- -GCGGUC-GCgCCUG-GG-GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 79222 0.73 0.152458
Target:  5'- aCGCCGGcCGCGGAucacgggcgcgcuCCCCGaGCUGCuaGCCGg -3'
miRNA:   3'- -GCGGUC-GCGCCU-------------GGGGC-CGGCG--UGGU- -5'
6683 3' -66.4 NC_001847.1 + 49594 0.73 0.152825
Target:  5'- gCGCCugGGCGCagcgGGAgCUCGGCgCGCGCCAc -3'
miRNA:   3'- -GCGG--UCGCG----CCUgGGGCCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 102783 0.73 0.152825
Target:  5'- aCGCCGGCGCcccccgcgcggGGGCUgggcccccuCCGcGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCGCG-----------CCUGG---------GGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 128382 0.73 0.152825
Target:  5'- aGCUGGCGCcucGCaCCGGCCGCACCGc -3'
miRNA:   3'- gCGGUCGCGcc-UGgGGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 130952 0.73 0.152825
Target:  5'- uGCCuGCGCGcGGCCCaCGGgCGCGCg- -3'
miRNA:   3'- gCGGuCGCGC-CUGGG-GCCgGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 72036 0.73 0.156166
Target:  5'- uGCgCGGCgGCGG-CCCCGGggcguacccggucCCGCACCAu -3'
miRNA:   3'- gCG-GUCG-CGCCuGGGGCC-------------GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 40916 0.73 0.156542
Target:  5'- gGCCcGCGCGGgcGCCCCGccgcgagcuccGCCGCGCgCAg -3'
miRNA:   3'- gCGGuCGCGCC--UGGGGC-----------CGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 56829 0.73 0.156542
Target:  5'- gGCCcgcGGCGCGcGCgCCGcGCCGCGCCGu -3'
miRNA:   3'- gCGG---UCGCGCcUGgGGC-CGGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.