miRNA display CGI


Results 141 - 160 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 121717 0.73 0.156542
Target:  5'- aGCCAGCGCaGGCCCCGcuccGCgaGCGCUAc -3'
miRNA:   3'- gCGGUCGCGcCUGGGGC----CGg-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 35311 0.73 0.158051
Target:  5'- gGCgGGCaacgcaaagcacuaaGCGGcCCCCGGCCGCuCCGa -3'
miRNA:   3'- gCGgUCG---------------CGCCuGGGGCCGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 89684 0.73 0.159192
Target:  5'- gGCCGaggacccgggguauGCGCGGGCCCauGCCGUGCCc -3'
miRNA:   3'- gCGGU--------------CGCGCCUGGGgcCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 61627 0.73 0.159957
Target:  5'- aGCCGGCucaugcaGCGGuCCuuGGCCGaCACCu -3'
miRNA:   3'- gCGGUCG-------CGCCuGGggCCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 37226 0.73 0.160341
Target:  5'- gCGgCGGCGCGGACgaCCCGGCggacggCGCGCUg -3'
miRNA:   3'- -GCgGUCGCGCCUG--GGGCCG------GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 61420 0.73 0.160341
Target:  5'- aGCCGGCccuCGacGCCCgCGGCCGCGCCGc -3'
miRNA:   3'- gCGGUCGc--GCc-UGGG-GCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 51150 0.73 0.160341
Target:  5'- uCGCUGGCGCuGGACCCguacucgaCGGCCGUuuGCCc -3'
miRNA:   3'- -GCGGUCGCG-CCUGGG--------GCCGGCG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 85979 0.73 0.160341
Target:  5'- aCGcCCGGCGCGuGACCgUGGUccgCGCGCCGa -3'
miRNA:   3'- -GC-GGUCGCGC-CUGGgGCCG---GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 34496 0.73 0.160341
Target:  5'- cCGCagCAGCGCGG-CCCUGGCgcCGCAgCCAg -3'
miRNA:   3'- -GCG--GUCGCGCCuGGGGCCG--GCGU-GGU- -5'
6683 3' -66.4 NC_001847.1 + 117822 0.73 0.160341
Target:  5'- gCGCCGGCuacGCGG-CCgUGuGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCG---CGCCuGGgGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 5767 0.72 0.16383
Target:  5'- gCGCCAacgcgaaGCGCGGcgucuaGCCCCgGGCCcgGCACCGc -3'
miRNA:   3'- -GCGGU-------CGCGCC------UGGGG-CCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 82221 0.72 0.164222
Target:  5'- gGCCuuCGCGGgcGCCCCGaGCCGCugCc -3'
miRNA:   3'- gCGGucGCGCC--UGGGGC-CGGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 104238 0.72 0.164222
Target:  5'- cCGCCGGCGCGcGCCUCaccgGGCUGCgGCCGg -3'
miRNA:   3'- -GCGGUCGCGCcUGGGG----CCGGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 106124 0.72 0.164222
Target:  5'- aGCgCGGCGCGGGCgCCGcugccGCCgGCGCCGg -3'
miRNA:   3'- gCG-GUCGCGCCUGgGGC-----CGG-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 3311 0.72 0.164222
Target:  5'- aGCgCGGCGCGGGCgCCGcugccGCCgGCGCCGg -3'
miRNA:   3'- gCG-GUCGCGCCUGgGGC-----CGG-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 127857 0.72 0.164222
Target:  5'- gCGCCAGCggcucguacuGCGGagcgucucgcguGCCCCcGCCGCGCCc -3'
miRNA:   3'- -GCGGUCG----------CGCC------------UGGGGcCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 51016 0.72 0.164222
Target:  5'- aCGCCAGCuuucGCGGcGCUCUGGCUGCGauCCAa -3'
miRNA:   3'- -GCGGUCG----CGCC-UGGGGCCGGCGU--GGU- -5'
6683 3' -66.4 NC_001847.1 + 56736 0.72 0.165798
Target:  5'- gCGCCAGCagcgcgcccgcagcgGCGGGguCCUCGGCCauGCGCCGc -3'
miRNA:   3'- -GCGGUCG---------------CGCCU--GGGGCCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 1145 0.72 0.168188
Target:  5'- gCGCCucGGCGCGcGGCUCCGGCaGCGCg- -3'
miRNA:   3'- -GCGG--UCGCGC-CUGGGGCCGgCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 103958 0.72 0.168188
Target:  5'- gCGCCucGGCGCGcGGCUCCGGCaGCGCg- -3'
miRNA:   3'- -GCGG--UCGCGC-CUGGGGCCGgCGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.