miRNA display CGI


Results 161 - 180 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 134163 0.72 0.168188
Target:  5'- cCGCCGGCgGCGGAagccCCgCCGGCCcggGUGCCGg -3'
miRNA:   3'- -GCGGUCG-CGCCU----GG-GGCCGG---CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 103958 0.72 0.168188
Target:  5'- gCGCCucGGCGCGcGGCUCCGGCaGCGCg- -3'
miRNA:   3'- -GCGG--UCGCGC-CUGGGGCCGgCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 22183 0.72 0.168188
Target:  5'- gCGCCGcgaauGCGCGGGCgCUgGGCCGUGCUg -3'
miRNA:   3'- -GCGGU-----CGCGCCUG-GGgCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 15547 0.72 0.171831
Target:  5'- gCGCCGGUGCgcgcgcggccgucGGGCCgCGGCCGcCGCUg -3'
miRNA:   3'- -GCGGUCGCG-------------CCUGGgGCCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 117399 0.72 0.171831
Target:  5'- uGCgAGCGCGaGGCCgUGGCCGCcucguacGCCGa -3'
miRNA:   3'- gCGgUCGCGC-CUGGgGCCGGCG-------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 90837 0.72 0.172239
Target:  5'- cCGCUcuGGCGCuGGcCCgCCGcGCCGCGCCGc -3'
miRNA:   3'- -GCGG--UCGCG-CCuGG-GGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 3075 0.72 0.172239
Target:  5'- cCGCCAGCGCGuccggcgcgcaGGCCgCGGCCgGCagGCCGc -3'
miRNA:   3'- -GCGGUCGCGC-----------CUGGgGCCGG-CG--UGGU- -5'
6683 3' -66.4 NC_001847.1 + 105888 0.72 0.172239
Target:  5'- cCGCCAGCGCGuccggcgcgcaGGCCgCGGCCgGCagGCCGc -3'
miRNA:   3'- -GCGGUCGCGC-----------CUGGgGCCGG-CG--UGGU- -5'
6683 3' -66.4 NC_001847.1 + 132006 0.72 0.172239
Target:  5'- cCGCCGGCGCcgccGGGCUCCcggugcucucGGCCGCGgCGg -3'
miRNA:   3'- -GCGGUCGCG----CCUGGGG----------CCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 59495 0.72 0.172239
Target:  5'- aGCCGGCaGgGGgugcGCCgaGGCCGCACCGg -3'
miRNA:   3'- gCGGUCG-CgCC----UGGggCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 111033 0.72 0.172239
Target:  5'- gGCCcgAGUGCGaGCCCUGGgacCCGCGCCAg -3'
miRNA:   3'- gCGG--UCGCGCcUGGGGCC---GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 8220 0.72 0.172239
Target:  5'- gGCCcgAGUGCGaGCCCUGGgacCCGCGCCAg -3'
miRNA:   3'- gCGG--UCGCGCcUGGGGCC---GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 98761 0.72 0.172239
Target:  5'- uCGCCgcGGCGCgcgcugcccGGGCCgCGGCgGCGCCGc -3'
miRNA:   3'- -GCGG--UCGCG---------CCUGGgGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 29193 0.72 0.172239
Target:  5'- cCGCCGGCGCcgccGGGCUCCcggugcucucGGCCGCGgCGg -3'
miRNA:   3'- -GCGGUCGCG----CCUGGGG----------CCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 90900 0.72 0.172239
Target:  5'- uCGCCGGCGCGcucaGCCCCacGCCcGCACCc -3'
miRNA:   3'- -GCGGUCGCGCc---UGGGGc-CGG-CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 3992 0.72 0.176378
Target:  5'- aCGCCAGCGCGGccaaguuaacaguccGCCCCccgagcagcauaCCGCGCCGc -3'
miRNA:   3'- -GCGGUCGCGCC---------------UGGGGcc----------GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 65254 0.72 0.176378
Target:  5'- cCGCCAcC-CGGGCCCgCGGCCGguCCGc -3'
miRNA:   3'- -GCGGUcGcGCCUGGG-GCCGGCguGGU- -5'
6683 3' -66.4 NC_001847.1 + 6329 0.72 0.176378
Target:  5'- gGCCAcguaCGCGGguGCCCCGGCgGCaACCGc -3'
miRNA:   3'- gCGGUc---GCGCC--UGGGGCCGgCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 27855 0.72 0.176378
Target:  5'- -cCCcGUGCGGGCCCUgugGGCCGCGCUc -3'
miRNA:   3'- gcGGuCGCGCCUGGGG---CCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 131826 0.72 0.176378
Target:  5'- gCGCCGGCggcaGCGG-CgCCCGcGCCGCGCUc -3'
miRNA:   3'- -GCGGUCG----CGCCuG-GGGC-CGGCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.