miRNA display CGI


Results 81 - 100 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 124934 0.66 0.408163
Target:  5'- aGCgGGCGCGcccuGGgCCCGGCgGCGgCGg -3'
miRNA:   3'- gCGgUCGCGC----CUgGGGCCGgCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 113232 0.66 0.408163
Target:  5'- cCGCCucgccCGCGG-CCUCGGCCGUcuCCu -3'
miRNA:   3'- -GCGGuc---GCGCCuGGGGCCGGCGu-GGu -5'
6683 3' -66.4 NC_001847.1 + 105043 0.66 0.408163
Target:  5'- gCGCCgcggcgcugGGCGCGGGcgugugguaguCCCCgGGCgGCACgCGg -3'
miRNA:   3'- -GCGG---------UCGCGCCU-----------GGGG-CCGgCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 64120 0.66 0.408163
Target:  5'- uGaCAGaGCGuGCCCaUGGCCGCGCCGa -3'
miRNA:   3'- gCgGUCgCGCcUGGG-GCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 103579 0.66 0.408163
Target:  5'- gGCCGGCcC--GCCgCCGGCgGCGCCGg -3'
miRNA:   3'- gCGGUCGcGccUGG-GGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 2230 0.66 0.408163
Target:  5'- gCGCCgcggcgcugGGCGCGGGcgugugguaguCCCCgGGCgGCACgCGg -3'
miRNA:   3'- -GCGG---------UCGCGCCU-----------GGGG-CCGgCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 10419 0.66 0.408163
Target:  5'- cCGCCucgccCGCGG-CCUCGGCCGUcuCCu -3'
miRNA:   3'- -GCGGuc---GCGCCuGGGGCCGGCGu-GGu -5'
6683 3' -66.4 NC_001847.1 + 73240 0.66 0.408163
Target:  5'- gCGgCGGCGCGGGCgCgcucgaGGCCGUGCg- -3'
miRNA:   3'- -GCgGUCGCGCCUGgGg-----CCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 74283 0.66 0.408163
Target:  5'- cCGCCcucGCGCuGGACgCCCuggcGCCGCGCa- -3'
miRNA:   3'- -GCGGu--CGCG-CCUG-GGGc---CGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 14401 0.66 0.408163
Target:  5'- aGCUGGCGuCGaGGCCCCGcUCGCAgCGg -3'
miRNA:   3'- gCGGUCGC-GC-CUGGGGCcGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 82824 0.66 0.408163
Target:  5'- -aCCAGCGUGuuUCCCGGuuGgCGCCGc -3'
miRNA:   3'- gcGGUCGCGCcuGGGGCCggC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 127393 0.66 0.408163
Target:  5'- cCGUCGG-GCuuGCCCUGGCCGcCGCCu -3'
miRNA:   3'- -GCGGUCgCGccUGGGGCCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 116746 0.66 0.408163
Target:  5'- aCGCCGcgcugugcuucuGCGCGGGgCCUgcugGGuCUGCGCCGa -3'
miRNA:   3'- -GCGGU------------CGCGCCUgGGG----CC-GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 119896 0.66 0.408163
Target:  5'- uCGCguGCGUGGccgccgccGCCgCCGGCgCGUACUu -3'
miRNA:   3'- -GCGguCGCGCC--------UGG-GGCCG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 45629 0.66 0.408163
Target:  5'- aCGUUGGgGCGGGCCUCG-CUGCGCa- -3'
miRNA:   3'- -GCGGUCgCGCCUGGGGCcGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 22121 0.66 0.408163
Target:  5'- aGCgGGCGCGcccuGGgCCCGGCgGCGgCGg -3'
miRNA:   3'- gCGgUCGCGC----CUgGGGCCGgCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 31633 0.66 0.407351
Target:  5'- gCGCUAGUgcacuuuguuucgGCGGGCCCgGaGCCcgcGCGCCc -3'
miRNA:   3'- -GCGGUCG-------------CGCCUGGGgC-CGG---CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 64870 0.66 0.407351
Target:  5'- cCGCCAgGCGCGcGuCCUCGcgguacagcgagaGCgGCACCAg -3'
miRNA:   3'- -GCGGU-CGCGC-CuGGGGC-------------CGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 16896 0.66 0.407351
Target:  5'- aCGCC-GCGCaGGuuuaccaGCCCgGGCCGCucggcgcagacGCCGg -3'
miRNA:   3'- -GCGGuCGCG-CC-------UGGGgCCGGCG-----------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 129492 0.66 0.40573
Target:  5'- gCGCCuGgGCGGGCCUUcaaagggucuauaaGGCgaGCACCGu -3'
miRNA:   3'- -GCGGuCgCGCCUGGGG--------------CCGg-CGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.