miRNA display CGI


Results 121 - 140 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 53780 0.66 0.40009
Target:  5'- aGCuaugCAGCGUGGGCCaguaCCuGCCGCACg- -3'
miRNA:   3'- gCG----GUCGCGCCUGG----GGcCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 79757 0.66 0.40009
Target:  5'- gCGCCAGCGC-GAUCa--GCgGCACCAg -3'
miRNA:   3'- -GCGGUCGCGcCUGGggcCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 69396 0.66 0.399289
Target:  5'- uGCCGGCggccuuuGCGGGCCCgGcGCUGUuCCu -3'
miRNA:   3'- gCGGUCG-------CGCCUGGGgC-CGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 41497 0.67 0.39212
Target:  5'- gCGCUccaugaccgAGCGUGcaGACguCCgCGGCCGCGCCGg -3'
miRNA:   3'- -GCGG---------UCGCGC--CUG--GG-GCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 40769 0.67 0.39212
Target:  5'- gCGUCAcgugcGCGCGGcagACgCC-GCCGCGCCAg -3'
miRNA:   3'- -GCGGU-----CGCGCC---UGgGGcCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 65815 0.67 0.39212
Target:  5'- cCGCCAGCaGC--GCCCgaGGcCCGCGCCc -3'
miRNA:   3'- -GCGGUCG-CGccUGGGg-CC-GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 46336 0.67 0.39212
Target:  5'- cCGCCcGCG-GGGCCgcgUCGGCgGCAUCGg -3'
miRNA:   3'- -GCGGuCGCgCCUGG---GGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 109775 0.67 0.39212
Target:  5'- gGCCAGUcuucguGCGGAUCgCCGcGaCCGcCGCCAc -3'
miRNA:   3'- gCGGUCG------CGCCUGG-GGC-C-GGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 14150 0.67 0.39212
Target:  5'- gCGCCuGgGCGGccGCUagggcgaCGGCCGCGCUu -3'
miRNA:   3'- -GCGGuCgCGCC--UGGg------GCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 76455 0.67 0.39212
Target:  5'- uGCCAGCGCcauGGCCagCCuGCCGC-CCGc -3'
miRNA:   3'- gCGGUCGCGc--CUGG--GGcCGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 116607 0.67 0.39212
Target:  5'- cCGCUcugcGGCGCGGACggCGGC-GCGCCc -3'
miRNA:   3'- -GCGG----UCGCGCCUGggGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 61852 0.67 0.39212
Target:  5'- uCGCCGGCGUaGGCCgCGccuGCCgGCGCCc -3'
miRNA:   3'- -GCGGUCGCGcCUGGgGC---CGG-CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 38372 0.67 0.39212
Target:  5'- -cCCAGCGCcGGCaCCGGCacugGCACCGg -3'
miRNA:   3'- gcGGUCGCGcCUGgGGCCGg---CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 116954 0.67 0.39212
Target:  5'- uGCCuG-GCGGugCuCCGGCUGC-CCu -3'
miRNA:   3'- gCGGuCgCGCCugG-GGCCGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 81704 0.67 0.39212
Target:  5'- gCGCCAgGCGCGcGCgCCGGUggaagcggcaCGCGCCc -3'
miRNA:   3'- -GCGGU-CGCGCcUGgGGCCG----------GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 41601 0.67 0.39212
Target:  5'- gGCCAGCGUGGcguuguucuGCUCCG-CCGUgaugGCCGc -3'
miRNA:   3'- gCGGUCGCGCC---------UGGGGCcGGCG----UGGU- -5'
6683 3' -66.4 NC_001847.1 + 127498 0.67 0.39212
Target:  5'- cCGCCA-UGCGGAUggCCUGGUC-CACCAu -3'
miRNA:   3'- -GCGGUcGCGCCUG--GGGCCGGcGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 78110 0.67 0.391329
Target:  5'- cCGCCucuuGGaCGCGGGCgCCaaaagcgGGCgCGCGCCGg -3'
miRNA:   3'- -GCGG----UC-GCGCCUGgGG-------CCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 96566 0.67 0.391329
Target:  5'- aCGCCAGgagccucCGCGG-CUCCGGCagcagGCGCUg -3'
miRNA:   3'- -GCGGUC-------GCGCCuGGGGCCGg----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 4257 0.67 0.387388
Target:  5'- gCGCCAGCagccagucggcuuugGCGG-CCacgaGGCgCGCGCCGg -3'
miRNA:   3'- -GCGGUCG---------------CGCCuGGgg--CCG-GCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.