miRNA display CGI


Results 141 - 160 of 884 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 4257 0.67 0.387388
Target:  5'- gCGCCAGCagccagucggcuuugGCGG-CCacgaGGCgCGCGCCGg -3'
miRNA:   3'- -GCGGUCG---------------CGCCuGGgg--CCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 121539 0.67 0.384254
Target:  5'- uGCCAGCGCgcuaaaagccaGGGCCUCuuggaagguGGCCGagucCACCGu -3'
miRNA:   3'- gCGGUCGCG-----------CCUGGGG---------CCGGC----GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 7832 0.67 0.384254
Target:  5'- gCGCCGGuCGCcgugucuccGGcACCgCCGGUgGCGCCu -3'
miRNA:   3'- -GCGGUC-GCG---------CC-UGG-GGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 67301 0.67 0.384254
Target:  5'- gGCCgcGGCGaCGG-CCCUuuuugGGCCGCGCgGa -3'
miRNA:   3'- gCGG--UCGC-GCCuGGGG-----CCGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 8611 0.67 0.384254
Target:  5'- aGCCgcAGCGCaaGCCCCgccgggggagcGGCCGCugCGg -3'
miRNA:   3'- gCGG--UCGCGccUGGGG-----------CCGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 38616 0.67 0.384254
Target:  5'- aGCCGGCGCGcGCggUCCGuuGCCGC-CCAc -3'
miRNA:   3'- gCGGUCGCGCcUG--GGGC--CGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 19397 0.67 0.384254
Target:  5'- aGCCGGUGUGuGugCCCauGGCCaccagcGCGCCc -3'
miRNA:   3'- gCGGUCGCGC-CugGGG--CCGG------CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 18781 0.67 0.384254
Target:  5'- gGCCgacAGCGCGaGCUCCgcggcggcGGCgCGCGCCAg -3'
miRNA:   3'- gCGG---UCGCGCcUGGGG--------CCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 75442 0.67 0.384254
Target:  5'- gGCgAGCGCGGuguUCCCGcuGCCG-ACCGg -3'
miRNA:   3'- gCGgUCGCGCCu--GGGGC--CGGCgUGGU- -5'
6683 3' -66.4 NC_001847.1 + 133173 0.67 0.384254
Target:  5'- uGCUAccuGCGCGGGCgCgGGCUGC-CCu -3'
miRNA:   3'- gCGGU---CGCGCCUGgGgCCGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 81389 0.67 0.384254
Target:  5'- uCGCC-GCcuCGGGCCgCCGGauCCGCGCUAc -3'
miRNA:   3'- -GCGGuCGc-GCCUGG-GGCC--GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 82611 0.67 0.384254
Target:  5'- gCGCCcuccGGCGaccauccccCGGGCCgCgCGGCCGCGCg- -3'
miRNA:   3'- -GCGG----UCGC---------GCCUGG-G-GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 133209 0.67 0.384254
Target:  5'- gCGCCGGCGgcccgaGuGGCCgCCGcGCCGCGgCGg -3'
miRNA:   3'- -GCGGUCGCg-----C-CUGG-GGC-CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 30396 0.67 0.384254
Target:  5'- gCGCCGGCGgcccgaGuGGCCgCCGcGCCGCGgCGg -3'
miRNA:   3'- -GCGGUCGCg-----C-CUGG-GGC-CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 84621 0.67 0.384254
Target:  5'- uCGCCuucgAGCGgGGccauGCCgCGGCUGCugCGc -3'
miRNA:   3'- -GCGG----UCGCgCC----UGGgGCCGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 93701 0.67 0.384254
Target:  5'- -uCCGGUucaUGGGCCCCGGCgacucgcauCGCACCGg -3'
miRNA:   3'- gcGGUCGc--GCCUGGGGCCG---------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 113028 0.67 0.384254
Target:  5'- cCGCCGcGCGUcugGGACgCCGGCaGCAgCCGc -3'
miRNA:   3'- -GCGGU-CGCG---CCUGgGGCCGgCGU-GGU- -5'
6683 3' -66.4 NC_001847.1 + 68976 0.67 0.384254
Target:  5'- gGCCcGCGCGGGCa-CGGCCgagaGCACg- -3'
miRNA:   3'- gCGGuCGCGCCUGggGCCGG----CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 36141 0.67 0.384254
Target:  5'- gCGCCgcGGaCGCGGGCCUgcagCGGCUGCAg-- -3'
miRNA:   3'- -GCGG--UC-GCGCCUGGG----GCCGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 131856 0.67 0.383473
Target:  5'- uCGCCgAGCuGCGcGCCgugcucgCCGGCCGCGCg- -3'
miRNA:   3'- -GCGG-UCG-CGCcUGG-------GGCCGGCGUGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.