miRNA display CGI


Results 61 - 80 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 8069 0.67 0.376493
Target:  5'- gCGCCAGCGgGGggGCCUguccaccaCGGCgagGCGCCGa -3'
miRNA:   3'- -GCGGUCGCgCC--UGGG--------GCCGg--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 8112 0.7 0.237574
Target:  5'- gCGCCAGCGCaggcgcgGGGCCCCaggggcgGGCgGUGCUg -3'
miRNA:   3'- -GCGGUCGCG-------CCUGGGG-------CCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 8220 0.72 0.172239
Target:  5'- gGCCcgAGUGCGaGCCCUGGgacCCGCGCCAg -3'
miRNA:   3'- gCGG--UCGCGCcUGGGGCC---GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 8611 0.67 0.384254
Target:  5'- aGCCgcAGCGCaaGCCCCgccgggggagcGGCCGCugCGg -3'
miRNA:   3'- gCGG--UCGCGccUGGGG-----------CCGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 8865 0.68 0.332191
Target:  5'- uGCUGGCGCaauuGGGCCCCaGa-GCGCCAg -3'
miRNA:   3'- gCGGUCGCG----CCUGGGGcCggCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 9553 0.67 0.359049
Target:  5'- gCGCCAGCGCugcaGccguccagcccgccGCCCgCGGCCGCgAUCGa -3'
miRNA:   3'- -GCGGUCGCGc---C--------------UGGG-GCCGGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 9605 0.69 0.291201
Target:  5'- aGCC-GCGgGGACgaccguagcugcgCCCGccGCCGCGCCGg -3'
miRNA:   3'- gCGGuCGCgCCUG-------------GGGC--CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 9716 0.81 0.042722
Target:  5'- aGCCAcGCGCGGGuCCuCCGGCgGCGCCGg -3'
miRNA:   3'- gCGGU-CGCGCCU-GG-GGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 10066 0.71 0.207888
Target:  5'- gGCC-GCGCGGGCCCagcgccccGCCGCGCgCGg -3'
miRNA:   3'- gCGGuCGCGCCUGGGgc------CGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 10120 0.68 0.339302
Target:  5'- cCGCCuucgcGGCgaGCGGG-CCCGGCCGUAgCGc -3'
miRNA:   3'- -GCGG-----UCG--CGCCUgGGGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 10203 0.69 0.261226
Target:  5'- cCGCCGcCGcCGGGCCCaGGgCGCGCCc -3'
miRNA:   3'- -GCGGUcGC-GCCUGGGgCCgGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 10304 0.68 0.29829
Target:  5'- aGUCAGUGCGGcgguGCUgCGGCgGCAaCCAu -3'
miRNA:   3'- gCGGUCGCGCC----UGGgGCCGgCGU-GGU- -5'
6683 3' -66.4 NC_001847.1 + 10419 0.66 0.408163
Target:  5'- cCGCCucgccCGCGG-CCUCGGCCGUcuCCu -3'
miRNA:   3'- -GCGGuc---GCGCCuGGGGCCGGCGu-GGu -5'
6683 3' -66.4 NC_001847.1 + 10542 0.66 0.40009
Target:  5'- gGCC--CGgGGACccgcgCCCGGCCgGCGCCGg -3'
miRNA:   3'- gCGGucGCgCCUG-----GGGCCGG-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 10578 0.74 0.12103
Target:  5'- gCGCCGgcggcccccccgcgcGCGCGGGCCggcgCCGGcCCGCGCCc -3'
miRNA:   3'- -GCGGU---------------CGCGCCUGG----GGCC-GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 10625 0.66 0.42461
Target:  5'- uGCUGGCGCuGGuCCuCCGGCUccuCGCCGg -3'
miRNA:   3'- gCGGUCGCG-CCuGG-GGCCGGc--GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 10698 0.74 0.122823
Target:  5'- gCGCCcgGGCGCGGcccGCgCCGGCCaaGCGCCGc -3'
miRNA:   3'- -GCGG--UCGCGCC---UGgGGCCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 10870 0.68 0.325191
Target:  5'- gGCgGGCGCGGGCgCCCaGGCagacCGCCu -3'
miRNA:   3'- gCGgUCGCGCCUG-GGG-CCGgc--GUGGu -5'
6683 3' -66.4 NC_001847.1 + 11514 0.68 0.30485
Target:  5'- aGCCaAGgGCGccGCCCCGGCCGaguuuGCCGc -3'
miRNA:   3'- gCGG-UCgCGCc-UGGGGCCGGCg----UGGU- -5'
6683 3' -66.4 NC_001847.1 + 11578 0.68 0.339302
Target:  5'- cCGCUcGCgGCGG-CCCCGGCCcaaGCcCCGu -3'
miRNA:   3'- -GCGGuCG-CGCCuGGGGCCGG---CGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.