miRNA display CGI


Results 101 - 120 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 16247 0.69 0.279269
Target:  5'- gGCCccGGCcCcGGCCCCGGCCccguGCACCGa -3'
miRNA:   3'- gCGG--UCGcGcCUGGGGCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 16662 0.69 0.29184
Target:  5'- uGgCGGCGCGGgcgcgucgcgcaGCCuuGGCUGCGCgGg -3'
miRNA:   3'- gCgGUCGCGCC------------UGGggCCGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 16663 0.67 0.376493
Target:  5'- gCGCCuacaGGCGC--GCCCgGGCCuuGCGCCGc -3'
miRNA:   3'- -GCGG----UCGCGccUGGGgCCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 16896 0.66 0.407351
Target:  5'- aCGCC-GCGCaGGuuuaccaGCCCgGGCCGCucggcgcagacGCCGg -3'
miRNA:   3'- -GCGGuCGCG-CC-------UGGGgCCGGCG-----------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 17312 0.69 0.2855
Target:  5'- uCGgCGGCGCGGcACa-CGGCCGCguaGCCGg -3'
miRNA:   3'- -GCgGUCGCGCC-UGggGCCGGCG---UGGU- -5'
6683 3' -66.4 NC_001847.1 + 18053 0.68 0.307505
Target:  5'- uGCCucAGUuuuGCGGgaaacccccggggcuACCCCgaGGCCGCACCGa -3'
miRNA:   3'- gCGG--UCG---CGCC---------------UGGGG--CCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 18408 0.72 0.180604
Target:  5'- aGCaCAGCGCGGcgugcaggGCCuuGGCCacguGCGCCGc -3'
miRNA:   3'- gCG-GUCGCGCC--------UGGggCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 18448 0.67 0.346523
Target:  5'- gGCCAGCcguGCGGugCCgCGcCCGCAgCGc -3'
miRNA:   3'- gCGGUCG---CGCCugGG-GCcGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 18520 0.7 0.227999
Target:  5'- gGCCAGCgcuGCGGgcgcGCCgCCGuCCGCGCCGc -3'
miRNA:   3'- gCGGUCG---CGCC----UGG-GGCcGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 18540 0.67 0.349442
Target:  5'- uGCCGGCcaggccguaguaGCGGGgCUCGgugaccggcccguguGCCGCGCCAa -3'
miRNA:   3'- gCGGUCG------------CGCCUgGGGC---------------CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 18728 0.69 0.261226
Target:  5'- aGCCcaAGCGCGcGGCCCgGGgCCcagaGCGCCGc -3'
miRNA:   3'- gCGG--UCGCGC-CUGGGgCC-GG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 18781 0.67 0.384254
Target:  5'- gGCCgacAGCGCGaGCUCCgcggcggcGGCgCGCGCCAg -3'
miRNA:   3'- gCGG---UCGCGCcUGGGG--------CCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 18877 0.67 0.361292
Target:  5'- gGCCAGCGUaGaGGCCgaGGCCccgaucuugaGCACCAc -3'
miRNA:   3'- gCGGUCGCG-C-CUGGggCCGG----------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 18970 0.76 0.098123
Target:  5'- aCGaCCAGCGCGGccgcggcGCCCgCGGCCGCcagcGCCu -3'
miRNA:   3'- -GC-GGUCGCGCC-------UGGG-GCCGGCG----UGGu -5'
6683 3' -66.4 NC_001847.1 + 19299 0.68 0.339302
Target:  5'- cCGCCaacaaacgAGCGCGG-CCgCGGCCGUGgCu -3'
miRNA:   3'- -GCGG--------UCGCGCCuGGgGCCGGCGUgGu -5'
6683 3' -66.4 NC_001847.1 + 19397 0.67 0.384254
Target:  5'- aGCCGGUGUGuGugCCCauGGCCaccagcGCGCCc -3'
miRNA:   3'- gCGGUCGCGC-CugGGG--CCGG------CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 19538 0.67 0.346523
Target:  5'- aCGgCAGC-CGGACUCCaaGCCGCACgCGa -3'
miRNA:   3'- -GCgGUCGcGCCUGGGGc-CGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 19639 0.71 0.189327
Target:  5'- gCGUCGGCGCGcGGCcgcuugcgggCCCGGCCGCcggaaacugcgACCGg -3'
miRNA:   3'- -GCGGUCGCGC-CUG----------GGGCCGGCG-----------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 20087 0.66 0.430459
Target:  5'- cCG-CGGCGCGGcccggccaucgcuaGCCCgUGGCCGC-CCu -3'
miRNA:   3'- -GCgGUCGCGCC--------------UGGG-GCCGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 20446 0.71 0.217745
Target:  5'- uGUCGGCGCGGAaggcgUCCagcaGGCCGCGgCGg -3'
miRNA:   3'- gCGGUCGCGCCU-----GGGg---CCGGCGUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.