miRNA display CGI


Results 121 - 140 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 21632 0.79 0.052406
Target:  5'- gGCCGGCGCGGGCcgcgCCCGGgCGCgACCGg -3'
miRNA:   3'- gCGGUCGCGCCUG----GGGCCgGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 21722 0.74 0.132161
Target:  5'- gCGCCagcagGGCGCGGGCCggcgCCGGCCcGCGCg- -3'
miRNA:   3'- -GCGG-----UCGCGCCUGG----GGCCGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 21768 0.76 0.095952
Target:  5'- cCGCCGGCGcCGGGCCcggcgCCGGCCGgGCgCGg -3'
miRNA:   3'- -GCGGUCGC-GCCUGG-----GGCCGGCgUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 21922 0.65 0.447428
Target:  5'- cCGCgGGCGaggcggaggagaGGACCgCGGCUcgcggcgGCACCGg -3'
miRNA:   3'- -GCGgUCGCg-----------CCUGGgGCCGG-------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 22121 0.66 0.408163
Target:  5'- aGCgGGCGCGcccuGGgCCCGGCgGCGgCGg -3'
miRNA:   3'- gCGgUCGCGC----CUgGGGCCGgCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 22183 0.72 0.168188
Target:  5'- gCGCCGcgaauGCGCGGGCgCUgGGCCGUGCUg -3'
miRNA:   3'- -GCGGU-----CGCGCCUG-GGgCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 22372 0.67 0.353853
Target:  5'- gCGCCAGUccuCGGggcagaaggcGCCCgGGCCGCGgCGa -3'
miRNA:   3'- -GCGGUCGc--GCC----------UGGGgCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 23306 0.67 0.353853
Target:  5'- -uCCAGCuCGGcGCCgCUGaGCCGCGCCAc -3'
miRNA:   3'- gcGGUCGcGCC-UGG-GGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 23607 0.69 0.284872
Target:  5'- uGCCGGgGCuGGGCCUCGGUgaagguucugcagUGCGCCc -3'
miRNA:   3'- gCGGUCgCG-CCUGGGGCCG-------------GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 23734 0.66 0.432981
Target:  5'- gGCCgAGCGCcGcCCCUGGCgGgGCCu -3'
miRNA:   3'- gCGG-UCGCGcCuGGGGCCGgCgUGGu -5'
6683 3' -66.4 NC_001847.1 + 23832 0.67 0.346523
Target:  5'- gGuCCAGCGCGcgcacGGCCCCGaGCCgGCugGCCu -3'
miRNA:   3'- gC-GGUCGCGC-----CUGGGGC-CGG-CG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 23861 0.74 0.125865
Target:  5'- gGCCgAGCGCcGcCCCCGGCCcgGCGCCGc -3'
miRNA:   3'- gCGG-UCGCGcCuGGGGCCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 24064 0.68 0.30485
Target:  5'- uCGCgCAGC-CGGGCCCaGGCcCGCGgCAg -3'
miRNA:   3'- -GCG-GUCGcGCCUGGGgCCG-GCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 24101 0.73 0.149188
Target:  5'- aGCUGGCGCGGGuCCCagGGCuCGCACUc -3'
miRNA:   3'- gCGGUCGCGCCU-GGGg-CCG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 24566 0.76 0.09129
Target:  5'- cCGUUAGCGCGu-CCCCGGCCGUGuCCAu -3'
miRNA:   3'- -GCGGUCGCGCcuGGGGCCGGCGU-GGU- -5'
6683 3' -66.4 NC_001847.1 + 25934 0.67 0.368839
Target:  5'- cCGCCGGCGCuuGGuugCCCGaUCGCACCc -3'
miRNA:   3'- -GCGGUCGCG--CCug-GGGCcGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 26471 0.71 0.216241
Target:  5'- uCGCCAGCGCGGGgagcggaaacucguCCgCGGCCccgGCCAc -3'
miRNA:   3'- -GCGGUCGCGCCU--------------GGgGCCGGcg-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 26644 0.71 0.217745
Target:  5'- uGCCGGgucuggGCGG-CCCCGGCCGgccCACCu -3'
miRNA:   3'- gCGGUCg-----CGCCuGGGGCCGGC---GUGGu -5'
6683 3' -66.4 NC_001847.1 + 26679 0.66 0.40573
Target:  5'- gCGCCuGgGCGGGCCUUcaaagggucuauaaGGCgaGCACCGu -3'
miRNA:   3'- -GCGGuCgCGCCUGGGG--------------CCGg-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 26689 0.68 0.325191
Target:  5'- aCGCCG--GCGGGCUCCaGCCGCAgCu -3'
miRNA:   3'- -GCGGUcgCGCCUGGGGcCGGCGUgGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.