miRNA display CGI


Results 141 - 160 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 26934 0.68 0.295697
Target:  5'- aGCCAGCGgGGACaaggagcagaaagCCGGCCa-GCCAg -3'
miRNA:   3'- gCGGUCGCgCCUGg------------GGCCGGcgUGGU- -5'
6683 3' -66.4 NC_001847.1 + 27106 0.67 0.353853
Target:  5'- uGCC-GCGCGcGCCCCGccggccGCCGCGgCGa -3'
miRNA:   3'- gCGGuCGCGCcUGGGGC------CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 27141 0.68 0.29829
Target:  5'- aGCCGGCGaGGGCuucuCCCGcGCCGCGgUAa -3'
miRNA:   3'- gCGGUCGCgCCUG----GGGC-CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 27184 0.66 0.40009
Target:  5'- uGUCGGCGgGGugCUucagcguuaggaCGGgCGCGCCGg -3'
miRNA:   3'- gCGGUCGCgCCugGG------------GCCgGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 27443 0.67 0.353853
Target:  5'- uCGCagCGGCGCGGggGCCCUG-CCGCugCc -3'
miRNA:   3'- -GCG--GUCGCGCC--UGGGGCcGGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 27486 0.76 0.089041
Target:  5'- aCGCCGGCuucgGCGGcagagGCCUCGGCCGcCGCCGc -3'
miRNA:   3'- -GCGGUCG----CGCC-----UGGGGCCGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 27795 0.75 0.108611
Target:  5'- gGCgGGUGCGGGCUCUGGCCauucGCGCCc -3'
miRNA:   3'- gCGgUCGCGCCUGGGGCCGG----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 27851 0.68 0.325191
Target:  5'- aCGCCGGCGCcagGGACgCgGGggGCGCCGa -3'
miRNA:   3'- -GCGGUCGCG---CCUGgGgCCggCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 27855 0.72 0.176378
Target:  5'- -cCCcGUGCGGGCCCUgugGGCCGCGCUc -3'
miRNA:   3'- gcGGuCGCGCCUGGGG---CCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 27909 0.66 0.423778
Target:  5'- gGCCgagggggcggagGGCGCGGaggacgcggacagGCCUgGGCCGCGgCGc -3'
miRNA:   3'- gCGG------------UCGCGCC-------------UGGGgCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 27992 0.7 0.255426
Target:  5'- gGCCGGgGCGGAgg-CGGCCGCgGCCGa -3'
miRNA:   3'- gCGGUCgCGCCUgggGCCGGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 28327 0.68 0.31152
Target:  5'- gCGCCgGGCcCGGcGCCCCgcggGGCCGCGCg- -3'
miRNA:   3'- -GCGG-UCGcGCC-UGGGG----CCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 28409 0.77 0.072852
Target:  5'- gCGCCAGCGCGGGCgcgcaaCCGGCgccCGCGCUg -3'
miRNA:   3'- -GCGGUCGCGCCUGg-----GGCCG---GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 28497 0.67 0.361292
Target:  5'- aCGCCuucuggcgaGGCGUGG--CCCGGCagCGCGCCGc -3'
miRNA:   3'- -GCGG---------UCGCGCCugGGGCCG--GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 28631 0.7 0.249732
Target:  5'- gGCC-GCG-GGGCCCgCGGCCGUguucguGCCGg -3'
miRNA:   3'- gCGGuCGCgCCUGGG-GCCGGCG------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 28854 0.73 0.149188
Target:  5'- cCGCCGGuCGgGGACgCCaUGGCCGCGCa- -3'
miRNA:   3'- -GCGGUC-GCgCCUG-GG-GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 28856 0.74 0.122823
Target:  5'- gGCCGcGCGCGcGACgCCGGCgGCGCUg -3'
miRNA:   3'- gCGGU-CGCGC-CUGgGGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 29013 0.72 0.176378
Target:  5'- gCGCCGGCggcaGCGG-CgCCCGcGCCGCGCUc -3'
miRNA:   3'- -GCGGUCG----CGCCuG-GGGC-CGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 29043 0.67 0.383473
Target:  5'- uCGCCgAGCuGCGcGCCgugcucgCCGGCCGCGCg- -3'
miRNA:   3'- -GCGG-UCG-CGCcUGG-------GGCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 29078 0.67 0.353853
Target:  5'- gCGCCGGCGCcccuGCCgCCGGCgaGCACg- -3'
miRNA:   3'- -GCGGUCGCGcc--UGG-GGCCGg-CGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.