miRNA display CGI


Results 41 - 60 of 884 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 131667 0.73 0.149188
Target:  5'- cCGCCGGuCGgGGACgCCaUGGCCGCGCa- -3'
miRNA:   3'- -GCGGUC-GCgCCUG-GG-GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 131444 0.7 0.249732
Target:  5'- gGCC-GCG-GGGCCCgCGGCCGUguucguGCCGg -3'
miRNA:   3'- gCGGuCGCgCCUGGG-GCCGGCG------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 131432 0.66 0.432981
Target:  5'- gGCCGGCGCGcGCgaUuGCCGCGCCu -3'
miRNA:   3'- gCGGUCGCGCcUGggGcCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 131326 0.68 0.339302
Target:  5'- aCGCCAcgcuCGCGGccgacGCCCCGuGCCGgcaCGCCGu -3'
miRNA:   3'- -GCGGUc---GCGCC-----UGGGGC-CGGC---GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 131310 0.67 0.361292
Target:  5'- aCGCCuucuggcgaGGCGUGG--CCCGGCagCGCGCCGc -3'
miRNA:   3'- -GCGG---------UCGCGCCugGGGCCG--GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 131226 0.7 0.249732
Target:  5'- uGCCAGCGCuGugCgUGcGuCCGCGCCAc -3'
miRNA:   3'- gCGGUCGCGcCugGgGC-C-GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 131222 0.77 0.072852
Target:  5'- gCGCCAGCGCGGGCgcgcaaCCGGCgccCGCGCUg -3'
miRNA:   3'- -GCGGUCGCGCCUGg-----GGCCG---GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 131140 0.68 0.31152
Target:  5'- gCGCCgGGCcCGGcGCCCCgcggGGCCGCGCg- -3'
miRNA:   3'- -GCGG-UCGcGCC-UGGGG----CCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 131137 0.66 0.408163
Target:  5'- uGCUcggGGgGCGGACuguuaaCuuGGCCGCGCUg -3'
miRNA:   3'- gCGG---UCgCGCCUG------GggCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 130952 0.73 0.152825
Target:  5'- uGCCuGCGCGcGGCCCaCGGgCGCGCg- -3'
miRNA:   3'- gCGGuCGCGC-CUGGG-GCCgGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 130863 0.75 0.108611
Target:  5'- gCGCCGGCGCGcGCCUCguGGCCGCcaaaGCCGa -3'
miRNA:   3'- -GCGGUCGCGCcUGGGG--CCGGCG----UGGU- -5'
6683 3' -66.4 NC_001847.1 + 130805 0.7 0.255426
Target:  5'- gGCCGGgGCGGAgg-CGGCCGCgGCCGa -3'
miRNA:   3'- gCGGUCgCGCCUgggGCCGGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 130747 0.68 0.30485
Target:  5'- aCGCggaCAGCGCcuGGGCCgCGGCgCGCGCg- -3'
miRNA:   3'- -GCG---GUCGCG--CCUGGgGCCG-GCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 130664 0.68 0.325191
Target:  5'- aCGCCGGCGCcagGGACgCgGGggGCGCCGa -3'
miRNA:   3'- -GCGGUCGCG---CCUGgGgCCggCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 130256 0.67 0.353853
Target:  5'- uCGCagCGGCGCGGggGCCCUG-CCGCugCc -3'
miRNA:   3'- -GCG--GUCGCGCC--UGGGGCcGGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 130171 0.68 0.316254
Target:  5'- aCGUCAGCgaccccGCGGGCgCCCGGCCugaagagacgggcgGCGCgGa -3'
miRNA:   3'- -GCGGUCG------CGCCUG-GGGCCGG--------------CGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 129954 0.68 0.29829
Target:  5'- aGCCGGCGaGGGCuucuCCCGcGCCGCGgUAa -3'
miRNA:   3'- gCGGUCGCgCCUG----GGGC-CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 129919 0.67 0.353853
Target:  5'- uGCC-GCGCGcGCCCCGccggccGCCGCGgCGa -3'
miRNA:   3'- gCGGuCGCGCcUGGGGC------CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 129763 0.79 0.059058
Target:  5'- cCGCCGGCcgcuCGGACcgccggagccugggCCCGGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCGc---GCCUG--------------GGGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 129746 0.67 0.379585
Target:  5'- aGCCAGCGgGGACgaaggagcagaaagCCGGCCa-GCCAg -3'
miRNA:   3'- gCGGUCGCgCCUGg-------------GGCCGGcgUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.