miRNA display CGI


Results 81 - 100 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 125185 0.67 0.353853
Target:  5'- gCGCCAGUccuCGGggcagaaggcGCCCgGGCCGCGgCGa -3'
miRNA:   3'- -GCGGUCGc--GCC----------UGGGgCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 124934 0.66 0.408163
Target:  5'- aGCgGGCGCGcccuGGgCCCGGCgGCGgCGg -3'
miRNA:   3'- gCGgUCGCGC----CUgGGGCCGgCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 124864 0.69 0.261226
Target:  5'- gGCgAGCGCGcGGCCCgCGGUuuuuaUGCGCCc -3'
miRNA:   3'- gCGgUCGCGC-CUGGG-GCCG-----GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 124581 0.76 0.095952
Target:  5'- cCGCCGGCGcCGGGCCcggcgCCGGCCGgGCgCGg -3'
miRNA:   3'- -GCGGUCGC-GCCUGG-----GGCCGGCgUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 124535 0.74 0.132161
Target:  5'- gCGCCagcagGGCGCGGGCCggcgCCGGCCcGCGCg- -3'
miRNA:   3'- -GCGG-----UCGCGCCUGG----GGCCGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 124445 0.79 0.052406
Target:  5'- gGCCGGCGCGGGCcgcgCCCGGgCGCgACCGg -3'
miRNA:   3'- gCGGUCGCGCCUG----GGGCCgGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 124284 0.67 0.361292
Target:  5'- gCGCCcGCGCccgccgcGCCUCGGCCacGCGCCGc -3'
miRNA:   3'- -GCGGuCGCGcc-----UGGGGCCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 124219 0.67 0.368839
Target:  5'- gCGCCAGC-CGGcucGCCUCGcgguaguaccgcGCCGcCACCAg -3'
miRNA:   3'- -GCGGUCGcGCC---UGGGGC------------CGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 123957 0.69 0.267132
Target:  5'- aGCCccGCGCGGACCagCGGCaGCcCCAg -3'
miRNA:   3'- gCGGu-CGCGCCUGGg-GCCGgCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 123823 0.69 0.261226
Target:  5'- gCGCCAGCcgcccGCcGGCCUCGGCgggCGCGCCc -3'
miRNA:   3'- -GCGGUCG-----CGcCUGGGGCCG---GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 123704 0.66 0.441447
Target:  5'- cCGCUGGCGCGGGgUCgcaCGGCaGCACUu -3'
miRNA:   3'- -GCGGUCGCGCCUgGG---GCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 123633 0.7 0.249732
Target:  5'- gGCCGGgGCGGcGCCCuUGGCUgaagGCGCCu -3'
miRNA:   3'- gCGGUCgCGCC-UGGG-GCCGG----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 123559 0.68 0.29829
Target:  5'- gGCCAGCGCagaagcaaccGGcACCgCGgcaGCCGCACCc -3'
miRNA:   3'- gCGGUCGCG----------CC-UGGgGC---CGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 123516 0.67 0.367321
Target:  5'- gGCCAGggcugcCGCGGGCUCggcuaaggccaaGGCCGCugCGa -3'
miRNA:   3'- gCGGUC------GCGCCUGGGg-----------CCGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 123247 1.07 0.000414
Target:  5'- gCGCCAGCGCGGACCCCGGCCGCACCAg -3'
miRNA:   3'- -GCGGUCGCGCCUGGGGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 123058 0.7 0.233278
Target:  5'- cCGCgGGCGcCGGACCCgCGGCgcucCGCgGCCu -3'
miRNA:   3'- -GCGgUCGC-GCCUGGG-GCCG----GCG-UGGu -5'
6683 3' -66.4 NC_001847.1 + 122825 0.67 0.353853
Target:  5'- aGCCGGCG-GGcgcGCCCaccgGGcCCGCGCCc -3'
miRNA:   3'- gCGGUCGCgCC---UGGGg---CC-GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 122534 0.69 0.2855
Target:  5'- uGCC-GCcCGGACCCUgccggucgcuGGCCGCACgAg -3'
miRNA:   3'- gCGGuCGcGCCUGGGG----------CCGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 122179 0.68 0.3183
Target:  5'- -aCCAGCGacCGGGcccacCCCCGGCC-CGCCGc -3'
miRNA:   3'- gcGGUCGC--GCCU-----GGGGCCGGcGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 122019 0.76 0.093594
Target:  5'- aGgCGGCGCGGcgccgcccgcgcGCCCCGGCCGCGaCAa -3'
miRNA:   3'- gCgGUCGCGCC------------UGGGGCCGGCGUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.