miRNA display CGI


Results 101 - 120 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 121991 0.66 0.42461
Target:  5'- uGCCAGCaGCccaACCgCCGGCCGCGg-- -3'
miRNA:   3'- gCGGUCG-CGcc-UGG-GGCCGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 121732 0.7 0.251997
Target:  5'- gCGCUGGCGCgcccgucuuucucccGGGCCCgCGGCgCGC-CCGg -3'
miRNA:   3'- -GCGGUCGCG---------------CCUGGG-GCCG-GCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 121717 0.73 0.156542
Target:  5'- aGCCAGCGCaGGCCCCGcuccGCgaGCGCUAc -3'
miRNA:   3'- gCGGUCGCGcCUGGGGC----CGg-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 121539 0.67 0.384254
Target:  5'- uGCCAGCGCgcuaaaagccaGGGCCUCuuggaagguGGCCGagucCACCGu -3'
miRNA:   3'- gCGGUCGCG-----------CCUGGGG---------CCGGC----GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 121458 0.67 0.353853
Target:  5'- gCGCuCAGCGUGGACCgcguacUCGGCCaucaGCAgCGu -3'
miRNA:   3'- -GCG-GUCGCGCCUGG------GGCCGG----CGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 121225 0.66 0.43551
Target:  5'- aCGCCGuCGCGGgccucccggaacuccACCaggaacaCCGGgCGCACCAg -3'
miRNA:   3'- -GCGGUcGCGCC---------------UGG-------GGCCgGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 121204 0.66 0.42461
Target:  5'- uGCgCGGgGCGGcCCCCcuGCCGCGgCGc -3'
miRNA:   3'- gCG-GUCgCGCCuGGGGc-CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 121175 0.68 0.29829
Target:  5'- uGCCGGCcagggGCGGGCUCgccacgGGCCGCAgCCGc -3'
miRNA:   3'- gCGGUCG-----CGCCUGGGg-----CCGGCGU-GGU- -5'
6683 3' -66.4 NC_001847.1 + 121006 0.74 0.135416
Target:  5'- cCGCCcaGGCGCGGGCCCCG-CC-CAUCGc -3'
miRNA:   3'- -GCGG--UCGCGCCUGGGGCcGGcGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 120978 0.8 0.049802
Target:  5'- uGCCuuuAGCGCGGccGCCCCGGCCGCcgcugcgcaGCCGg -3'
miRNA:   3'- gCGG---UCGCGCC--UGGGGCCGGCG---------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 120787 0.67 0.376493
Target:  5'- gCGCUGGCgGCGuuCCCCGcaggcGCCGcCACCAc -3'
miRNA:   3'- -GCGGUCG-CGCcuGGGGC-----CGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 120693 0.68 0.325191
Target:  5'- aCGCCgagcAGCGCGG-CCgCGcGCUcgGCGCCAa -3'
miRNA:   3'- -GCGG----UCGCGCCuGGgGC-CGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 120448 0.7 0.231683
Target:  5'- uCGUCAGCuGCGccugcuccaucgccGcGCCgCCGGCCGCGCCGu -3'
miRNA:   3'- -GCGGUCG-CGC--------------C-UGG-GGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 120044 0.68 0.332191
Target:  5'- gGCCgucagcaugAGCGCGG-CCCCGcuGCCGCAg-- -3'
miRNA:   3'- gCGG---------UCGCGCCuGGGGC--CGGCGUggu -5'
6683 3' -66.4 NC_001847.1 + 119942 0.7 0.233278
Target:  5'- gCGCCGGCGCGGugCg-GGuCCGCugCc -3'
miRNA:   3'- -GCGGUCGCGCCugGggCC-GGCGugGu -5'
6683 3' -66.4 NC_001847.1 + 119896 0.66 0.408163
Target:  5'- uCGCguGCGUGGccgccgccGCCgCCGGCgCGUACUu -3'
miRNA:   3'- -GCGguCGCGCC--------UGG-GGCCG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 119835 0.7 0.222822
Target:  5'- aCGCC--CGCGGcCCCCGacGCCGUGCCGg -3'
miRNA:   3'- -GCGGucGCGCCuGGGGC--CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 119618 0.71 0.203105
Target:  5'- gCGCCAGCagcccGCGGcUCCCGccgaGCCGCAUCGa -3'
miRNA:   3'- -GCGGUCG-----CGCCuGGGGC----CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 119583 0.69 0.279269
Target:  5'- gCGgCGGcCGCGG-CCCgaCGGCCGCGCg- -3'
miRNA:   3'- -GCgGUC-GCGCCuGGG--GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 119378 0.67 0.360543
Target:  5'- cCGCCGGCgaaaGCGGGCCgcccgcgUCGGCauagGCGCCc -3'
miRNA:   3'- -GCGGUCG----CGCCUGG-------GGCCGg---CGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.