miRNA display CGI


Results 121 - 140 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 119110 0.67 0.376493
Target:  5'- aGCgGGUGCG---CCCGGCCGCugUAc -3'
miRNA:   3'- gCGgUCGCGCcugGGGCCGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 118944 0.67 0.361292
Target:  5'- aCGCCgcauGGCGCGGGCCaguuccgauUCGGgguCCGCgGCCAa -3'
miRNA:   3'- -GCGG----UCGCGCCUGG---------GGCC---GGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 118799 0.71 0.193826
Target:  5'- cCGCCAGCGC---CUCCaGGCCGUGCCGg -3'
miRNA:   3'- -GCGGUCGCGccuGGGG-CCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 118492 0.76 0.093594
Target:  5'- gCGCCuguaGGCGCgGGGCCCCGacggcaaagccGCCGCGCCc -3'
miRNA:   3'- -GCGG----UCGCG-CCUGGGGC-----------CGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 118301 0.67 0.353853
Target:  5'- uCGCCucgAGCGCc-GCCCCGaugcCCGCGCCAc -3'
miRNA:   3'- -GCGG---UCGCGccUGGGGCc---GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 117822 0.73 0.160341
Target:  5'- gCGCCGGCuacGCGG-CCgUGuGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCG---CGCCuGGgGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 117542 0.67 0.383473
Target:  5'- gGCCGuGCgcaaccccuuuccGCGGGCCCCGcCCGUGCUg -3'
miRNA:   3'- gCGGU-CG-------------CGCCUGGGGCcGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 117399 0.72 0.171831
Target:  5'- uGCgAGCGCGaGGCCgUGGCCGCcucguacGCCGa -3'
miRNA:   3'- gCGgUCGCGC-CUGGgGCCGGCG-------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 116954 0.67 0.39212
Target:  5'- uGCCuG-GCGGugCuCCGGCUGC-CCu -3'
miRNA:   3'- gCGGuCgCGCCugG-GGCCGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 116944 0.7 0.244143
Target:  5'- cCGCCAGCcCGaGACCUC-GCCGCGCg- -3'
miRNA:   3'- -GCGGUCGcGC-CUGGGGcCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 116746 0.66 0.408163
Target:  5'- aCGCCGcgcugugcuucuGCGCGGGgCCUgcugGGuCUGCGCCGa -3'
miRNA:   3'- -GCGGU------------CGCGCCUgGGG----CC-GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 116694 0.69 0.261226
Target:  5'- uGCgGGCGCGGcACCgcacggCUGGCCGCGgCGc -3'
miRNA:   3'- gCGgUCGCGCC-UGG------GGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 116607 0.67 0.39212
Target:  5'- cCGCUcugcGGCGCGGACggCGGC-GCGCCc -3'
miRNA:   3'- -GCGG----UCGCGCCUGggGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 116403 0.76 0.086844
Target:  5'- gCGgCGGCGCucuGGGCCCCgGGCCGCGCg- -3'
miRNA:   3'- -GCgGUCGCG---CCUGGGG-CCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 116359 0.67 0.368839
Target:  5'- cCGCCGcCGCGGAgCUcgcgcuguCGGCCGcCGCCu -3'
miRNA:   3'- -GCGGUcGCGCCUgGG--------GCCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 116160 0.75 0.10596
Target:  5'- gCGCUGGCggccGCGGGCgCCgCGGCCGCGCUg -3'
miRNA:   3'- -GCGGUCG----CGCCUG-GG-GCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 115873 0.67 0.353853
Target:  5'- cCGCaCAGaCGCuGcGCCgCCGGCuCGCGCCGc -3'
miRNA:   3'- -GCG-GUC-GCGcC-UGG-GGCCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 115787 0.68 0.332191
Target:  5'- gGCCAcCGuCGGGCgcgcgcaagaCCCGGCCGCGgCGc -3'
miRNA:   3'- gCGGUcGC-GCCUG----------GGGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 115526 0.66 0.432981
Target:  5'- aCGCCGGCGCcccGGGCCC-GaGCuCGgGCCc -3'
miRNA:   3'- -GCGGUCGCG---CCUGGGgC-CG-GCgUGGu -5'
6683 3' -66.4 NC_001847.1 + 115493 0.7 0.233278
Target:  5'- cCGgCGGC-CGGGCCCgcaagCGGCCGCGCg- -3'
miRNA:   3'- -GCgGUCGcGCCUGGG-----GCCGGCGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.