Results 61 - 80 of 884 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6683 | 3' | -66.4 | NC_001847.1 | + | 97820 | 0.76 | 0.084698 |
Target: 5'- aCGCCAGCGCuGugCUCGGCgCGCGCgGg -3' miRNA: 3'- -GCGGUCGCGcCugGGGCCG-GCGUGgU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 69318 | 0.76 | 0.089041 |
Target: 5'- uGCCuuuugGGCGCGGGCCUCGGgCGCugCu -3' miRNA: 3'- gCGG-----UCGCGCCUGGGGCCgGCGugGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 133729 | 0.75 | 0.10596 |
Target: 5'- cCGCCAcCGCGGugCCCGuGCCGCcgcgcgaguACCGg -3' miRNA: 3'- -GCGGUcGCGCCugGGGC-CGGCG---------UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 27795 | 0.75 | 0.108611 |
Target: 5'- gGCgGGUGCGGGCUCUGGCCauucGCGCCc -3' miRNA: 3'- gCGgUCGCGCCUGGGGCCGG----CGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 134250 | 0.75 | 0.108611 |
Target: 5'- gGCCGGCggccGCGGcgGCCCCGGCgCGgGCCGc -3' miRNA: 3'- gCGGUCG----CGCC--UGGGGCCG-GCgUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 90376 | 0.75 | 0.11105 |
Target: 5'- uGCUGGaCGCGGAccacggcCCCCGGCCGUACg- -3' miRNA: 3'- gCGGUC-GCGCCU-------GGGGCCGGCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 16176 | 0.75 | 0.111324 |
Target: 5'- cCGUUGGcCGCGGACCCCgaaucggaacuGGCCcGCGCCAu -3' miRNA: 3'- -GCGGUC-GCGCCUGGGG-----------CCGG-CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 47555 | 0.75 | 0.111324 |
Target: 5'- gGCgGGCGCGGggaGCCCggCGGCCGCGCa- -3' miRNA: 3'- gCGgUCGCGCC---UGGG--GCCGGCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 84776 | 0.75 | 0.111324 |
Target: 5'- gGCCAGCaGgGcGACgCCGGCCaGCGCCAg -3' miRNA: 3'- gCGGUCG-CgC-CUGgGGCCGG-CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 132336 | 0.75 | 0.111324 |
Target: 5'- uGCCGGCGCGG-CUggCGGCCGCGCUc -3' miRNA: 3'- gCGGUCGCGCCuGGg-GCCGGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 89594 | 0.75 | 0.10596 |
Target: 5'- cCGCCugcguGCGCGGGCUCUGGCUG-GCCAa -3' miRNA: 3'- -GCGGu----CGCGCCUGGGGCCGGCgUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 72228 | 0.75 | 0.10596 |
Target: 5'- aGCCGccCGCGGGCCCCGagcacCCGCGCCAc -3' miRNA: 3'- gCGGUc-GCGCCUGGGGCc----GGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 27486 | 0.76 | 0.089041 |
Target: 5'- aCGCCGGCuucgGCGGcagagGCCUCGGCCGcCGCCGc -3' miRNA: 3'- -GCGGUCG----CGCC-----UGGGGCCGGC-GUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 24566 | 0.76 | 0.09129 |
Target: 5'- cCGUUAGCGCGu-CCCCGGCCGUGuCCAu -3' miRNA: 3'- -GCGGUCGCGCcuGGGGCCGGCGU-GGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 43127 | 0.76 | 0.093594 |
Target: 5'- cCGCagaCGGCGCGGGCCCgCGGgCGCugCGc -3' miRNA: 3'- -GCG---GUCGCGCCUGGG-GCCgGCGugGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 124581 | 0.76 | 0.095952 |
Target: 5'- cCGCCGGCGcCGGGCCcggcgCCGGCCGgGCgCGg -3' miRNA: 3'- -GCGGUCGC-GCCUGG-----GGCCGGCgUG-GU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 18970 | 0.76 | 0.098123 |
Target: 5'- aCGaCCAGCGCGGccgcggcGCCCgCGGCCGCcagcGCCu -3' miRNA: 3'- -GC-GGUCGCGCC-------UGGG-GCCGGCG----UGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 80768 | 0.76 | 0.098367 |
Target: 5'- gCGCCGGCGCGGACcgggacgaCCCGGCCuuuauacaCGCCu -3' miRNA: 3'- -GCGGUCGCGCCUG--------GGGCCGGc-------GUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 102134 | 0.75 | 0.100839 |
Target: 5'- uCGCCccGCGCGccCCCCGGCCGCuCCGg -3' miRNA: 3'- -GCGGu-CGCGCcuGGGGCCGGCGuGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 101489 | 0.75 | 0.10337 |
Target: 5'- gCGCUAGCGacCGaGGCgCCGGCUGCACCGc -3' miRNA: 3'- -GCGGUCGC--GC-CUGgGGCCGGCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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