miRNA display CGI


Results 101 - 120 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 124535 0.74 0.132161
Target:  5'- gCGCCagcagGGCGCGGGCCggcgCCGGCCcGCGCg- -3'
miRNA:   3'- -GCGG-----UCGCGCCUGG----GGCCGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 135067 0.74 0.135416
Target:  5'- aGcCCAGaGCGGGCCCgGGCCcgccGCGCCGa -3'
miRNA:   3'- gC-GGUCgCGCCUGGGgCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 44258 0.74 0.135416
Target:  5'- gCGCCGGCGacugggcaaCGG-CCCCGGCCucgaCACCAg -3'
miRNA:   3'- -GCGGUCGC---------GCCuGGGGCCGGc---GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 40069 0.73 0.14215
Target:  5'- aCGCCAGCGCcucuaauugcACCCCuuGCCGCGCCGg -3'
miRNA:   3'- -GCGGUCGCGcc--------UGGGGc-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 52284 0.73 0.143533
Target:  5'- gCGCCGGCuuugugugcgcgaccGCGGGCgCgGGCgGCGCCAa -3'
miRNA:   3'- -GCGGUCG---------------CGCCUGgGgCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 28856 0.74 0.122823
Target:  5'- gGCCGcGCGCGcGACgCCGGCgGCGCUg -3'
miRNA:   3'- gCGGU-CGCGC-CUGgGGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 87409 0.74 0.122823
Target:  5'- gCGCgGGCG-GGGCCCCGcccGCCGCGCUc -3'
miRNA:   3'- -GCGgUCGCgCCUGGGGC---CGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 133729 0.75 0.10596
Target:  5'- cCGCCAcCGCGGugCCCGuGCCGCcgcgcgaguACCGg -3'
miRNA:   3'- -GCGGUcGCGCCugGGGC-CGGCG---------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 27795 0.75 0.108611
Target:  5'- gGCgGGUGCGGGCUCUGGCCauucGCGCCc -3'
miRNA:   3'- gCGgUCGCGCCUGGGGCCGG----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 134250 0.75 0.108611
Target:  5'- gGCCGGCggccGCGGcgGCCCCGGCgCGgGCCGc -3'
miRNA:   3'- gCGGUCG----CGCC--UGGGGCCG-GCgUGGU- -5'
6683 3' -66.4 NC_001847.1 + 90376 0.75 0.11105
Target:  5'- uGCUGGaCGCGGAccacggcCCCCGGCCGUACg- -3'
miRNA:   3'- gCGGUC-GCGCCU-------GGGGCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 16176 0.75 0.111324
Target:  5'- cCGUUGGcCGCGGACCCCgaaucggaacuGGCCcGCGCCAu -3'
miRNA:   3'- -GCGGUC-GCGCCUGGGG-----------CCGG-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 47555 0.75 0.111324
Target:  5'- gGCgGGCGCGGggaGCCCggCGGCCGCGCa- -3'
miRNA:   3'- gCGgUCGCGCC---UGGG--GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 84776 0.75 0.111324
Target:  5'- gGCCAGCaGgGcGACgCCGGCCaGCGCCAg -3'
miRNA:   3'- gCGGUCG-CgC-CUGgGGCCGG-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 132336 0.75 0.111324
Target:  5'- uGCCGGCGCGG-CUggCGGCCGCGCUc -3'
miRNA:   3'- gCGGUCGCGCCuGGg-GCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 107144 0.74 0.116942
Target:  5'- cCGCUucGGcCGCGGccgccuccGCCCCGGCCGCgGCCGc -3'
miRNA:   3'- -GCGG--UC-GCGCC--------UGGGGCCGGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 46601 0.74 0.116942
Target:  5'- cCGCCGGCGCGG-CCUCGcGgCGCACgAg -3'
miRNA:   3'- -GCGGUCGCGCCuGGGGC-CgGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 102951 0.74 0.119849
Target:  5'- cCGCgGGCcuCGGGCCCCGGCCGggggGCCGg -3'
miRNA:   3'- -GCGgUCGc-GCCUGGGGCCGGCg---UGGU- -5'
6683 3' -66.4 NC_001847.1 + 105748 0.74 0.12103
Target:  5'- cCGCCAGCGCGGccGCCUccagcgcggCGGCCGCcucggcggcagcgccGCCGg -3'
miRNA:   3'- -GCGGUCGCGCC--UGGG---------GCCGGCG---------------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 113391 0.74 0.12103
Target:  5'- gCGCCGgcggcccccccgcgcGCGCGGGCCggcgCCGGcCCGCGCCc -3'
miRNA:   3'- -GCGGU---------------CGCGCCUGG----GGCC-GGCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.