Results 121 - 140 of 884 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6683 | 3' | -66.4 | NC_001847.1 | + | 56829 | 0.73 | 0.156542 |
Target: 5'- gGCCcgcGGCGCGcGCgCCGcGCCGCGCCGu -3' miRNA: 3'- gCGG---UCGCGCcUGgGGC-CGGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 37226 | 0.73 | 0.160341 |
Target: 5'- gCGgCGGCGCGGACgaCCCGGCggacggCGCGCUg -3' miRNA: 3'- -GCgGUCGCGCCUG--GGGCCG------GCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 60867 | 0.74 | 0.132161 |
Target: 5'- gCGuCCAGCGCGGGg--CGGCCGCGCCc -3' miRNA: 3'- -GC-GGUCGCGCCUgggGCCGGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 88448 | 0.74 | 0.128978 |
Target: 5'- gCGUgGGcCGCGGGCCCCGaCCGCGCg- -3' miRNA: 3'- -GCGgUC-GCGCCUGGGGCcGGCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 34763 | 0.74 | 0.128978 |
Target: 5'- aGCUGGCGCGGcugcgcGCCgCGGCCGCGgCGc -3' miRNA: 3'- gCGGUCGCGCC------UGGgGCCGGCGUgGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 84776 | 0.75 | 0.111324 |
Target: 5'- gGCCAGCaGgGcGACgCCGGCCaGCGCCAg -3' miRNA: 3'- gCGGUCG-CgC-CUGgGGCCGG-CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 132336 | 0.75 | 0.111324 |
Target: 5'- uGCCGGCGCGG-CUggCGGCCGCGCUc -3' miRNA: 3'- gCGGUCGCGCCuGGg-GCCGGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 107144 | 0.74 | 0.116942 |
Target: 5'- cCGCUucGGcCGCGGccgccuccGCCCCGGCCGCgGCCGc -3' miRNA: 3'- -GCGG--UC-GCGCC--------UGGGGCCGGCG-UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 46601 | 0.74 | 0.116942 |
Target: 5'- cCGCCGGCGCGG-CCUCGcGgCGCACgAg -3' miRNA: 3'- -GCGGUCGCGCCuGGGGC-CgGCGUGgU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 102951 | 0.74 | 0.119849 |
Target: 5'- cCGCgGGCcuCGGGCCCCGGCCGggggGCCGg -3' miRNA: 3'- -GCGgUCGc-GCCUGGGGCCGGCg---UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 105748 | 0.74 | 0.12103 |
Target: 5'- cCGCCAGCGCGGccGCCUccagcgcggCGGCCGCcucggcggcagcgccGCCGg -3' miRNA: 3'- -GCGGUCGCGCC--UGGG---------GCCGGCG---------------UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 113391 | 0.74 | 0.12103 |
Target: 5'- gCGCCGgcggcccccccgcgcGCGCGGGCCggcgCCGGcCCGCGCCc -3' miRNA: 3'- -GCGGU---------------CGCGCCUGG----GGCC-GGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 51150 | 0.73 | 0.160341 |
Target: 5'- uCGCUGGCGCuGGACCCguacucgaCGGCCGUuuGCCc -3' miRNA: 3'- -GCGGUCGCG-CCUGGG--------GCCGGCG--UGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 87409 | 0.74 | 0.122823 |
Target: 5'- gCGCgGGCG-GGGCCCCGcccGCCGCGCUc -3' miRNA: 3'- -GCGgUCGCgCCUGGGGC---CGGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 28856 | 0.74 | 0.122823 |
Target: 5'- gGCCGcGCGCGcGACgCCGGCgGCGCUg -3' miRNA: 3'- gCGGU-CGCGC-CUGgGGCCGgCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 113511 | 0.74 | 0.122823 |
Target: 5'- gCGCCcgGGCGCGGcccGCgCCGGCCaaGCGCCGc -3' miRNA: 3'- -GCGG--UCGCGCC---UGgGGCCGG--CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 49477 | 0.74 | 0.122823 |
Target: 5'- gCGCCuGCGC--GCCagcaCGGCCGCGCCAa -3' miRNA: 3'- -GCGGuCGCGccUGGg---GCCGGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 134511 | 0.74 | 0.124032 |
Target: 5'- gGCCucgggggcggggggaGGCGCGGGCCgCGcGCCGCugCGg -3' miRNA: 3'- gCGG---------------UCGCGCCUGGgGC-CGGCGugGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 126674 | 0.74 | 0.125865 |
Target: 5'- gGCCgAGCGCcGcCCCCGGCCcgGCGCCGc -3' miRNA: 3'- gCGG-UCGCGcCuGGGGCCGG--CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 4221 | 0.74 | 0.125865 |
Target: 5'- aGCCcuGCGCGGugC-CGGCgCGCGCCGg -3' miRNA: 3'- gCGGu-CGCGCCugGgGCCG-GCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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