Results 141 - 160 of 884 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6683 | 3' | -66.4 | NC_001847.1 | + | 126914 | 0.73 | 0.149188 |
Target: 5'- aGCUGGCGCGGGuCCCagGGCuCGCACUc -3' miRNA: 3'- gCGGUCGCGCCU-GGGg-CCG-GCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 103104 | 0.73 | 0.14563 |
Target: 5'- aGCCcGCGCGGGCgCCGuccCCGCGCCc -3' miRNA: 3'- gCGGuCGCGCCUGgGGCc--GGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 134511 | 0.74 | 0.124032 |
Target: 5'- gGCCucgggggcggggggaGGCGCGGGCCgCGcGCCGCugCGg -3' miRNA: 3'- gCGG---------------UCGCGCCUGGgGC-CGGCGugGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 49477 | 0.74 | 0.122823 |
Target: 5'- gCGCCuGCGC--GCCagcaCGGCCGCGCCAa -3' miRNA: 3'- -GCGGuCGCGccUGGg---GCCGGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 113511 | 0.74 | 0.122823 |
Target: 5'- gCGCCcgGGCGCGGcccGCgCCGGCCaaGCGCCGc -3' miRNA: 3'- -GCGG--UCGCGCC---UGgGGCCGG--CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 28856 | 0.74 | 0.122823 |
Target: 5'- gGCCGcGCGCGcGACgCCGGCgGCGCUg -3' miRNA: 3'- gCGGU-CGCGC-CUGgGGCCGgCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 87409 | 0.74 | 0.122823 |
Target: 5'- gCGCgGGCG-GGGCCCCGcccGCCGCGCUc -3' miRNA: 3'- -GCGgUCGCgCCUGGGGC---CGGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 113391 | 0.74 | 0.12103 |
Target: 5'- gCGCCGgcggcccccccgcgcGCGCGGGCCggcgCCGGcCCGCGCCc -3' miRNA: 3'- -GCGGU---------------CGCGCCUGG----GGCC-GGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 105748 | 0.74 | 0.12103 |
Target: 5'- cCGCCAGCGCGGccGCCUccagcgcggCGGCCGCcucggcggcagcgccGCCGg -3' miRNA: 3'- -GCGGUCGCGCC--UGGG---------GCCGGCG---------------UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 102951 | 0.74 | 0.119849 |
Target: 5'- cCGCgGGCcuCGGGCCCCGGCCGggggGCCGg -3' miRNA: 3'- -GCGgUCGc-GCCUGGGGCCGGCg---UGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 126674 | 0.74 | 0.125865 |
Target: 5'- gGCCgAGCGCcGcCCCCGGCCcgGCGCCGc -3' miRNA: 3'- gCGG-UCGCGcCuGGGGCCGG--CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 4221 | 0.74 | 0.125865 |
Target: 5'- aGCCcuGCGCGGugC-CGGCgCGCGCCGg -3' miRNA: 3'- gCGGu-CGCGCCugGgGCCG-GCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 52284 | 0.73 | 0.143533 |
Target: 5'- gCGCCGGCuuugugugcgcgaccGCGGGCgCgGGCgGCGCCAa -3' miRNA: 3'- -GCGGUCG---------------CGCCUGgGgCCGgCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 40069 | 0.73 | 0.14215 |
Target: 5'- aCGCCAGCGCcucuaauugcACCCCuuGCCGCGCCGg -3' miRNA: 3'- -GCGGUCGCGcc--------UGGGGc-CGGCGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 44258 | 0.74 | 0.135416 |
Target: 5'- gCGCCGGCGacugggcaaCGG-CCCCGGCCucgaCACCAg -3' miRNA: 3'- -GCGGUCGC---------GCCuGGGGCCGGc---GUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 135067 | 0.74 | 0.135416 |
Target: 5'- aGcCCAGaGCGGGCCCgGGCCcgccGCGCCGa -3' miRNA: 3'- gC-GGUCgCGCCUGGGgCCGG----CGUGGU- -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 124535 | 0.74 | 0.132161 |
Target: 5'- gCGCCagcagGGCGCGGGCCggcgCCGGCCcGCGCg- -3' miRNA: 3'- -GCGG-----UCGCGCCUGG----GGCCGG-CGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 60867 | 0.74 | 0.132161 |
Target: 5'- gCGuCCAGCGCGGGg--CGGCCGCGCCc -3' miRNA: 3'- -GC-GGUCGCGCCUgggGCCGGCGUGGu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 88448 | 0.74 | 0.128978 |
Target: 5'- gCGUgGGcCGCGGGCCCCGaCCGCGCg- -3' miRNA: 3'- -GCGgUC-GCGCCUGGGGCcGGCGUGgu -5' |
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6683 | 3' | -66.4 | NC_001847.1 | + | 34763 | 0.74 | 0.128978 |
Target: 5'- aGCUGGCGCGGcugcgcGCCgCGGCCGCGgCGc -3' miRNA: 3'- gCGGUCGCGCC------UGGgGCCGGCGUgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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