miRNA display CGI


Results 161 - 180 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 135067 0.74 0.135416
Target:  5'- aGcCCAGaGCGGGCCCgGGCCcgccGCGCCGa -3'
miRNA:   3'- gC-GGUCgCGCCUGGGgCCGG----CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 124535 0.74 0.132161
Target:  5'- gCGCCagcagGGCGCGGGCCggcgCCGGCCcGCGCg- -3'
miRNA:   3'- -GCGG-----UCGCGCCUGG----GGCCGG-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 60867 0.74 0.132161
Target:  5'- gCGuCCAGCGCGGGg--CGGCCGCGCCc -3'
miRNA:   3'- -GC-GGUCGCGCCUgggGCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 88448 0.74 0.128978
Target:  5'- gCGUgGGcCGCGGGCCCCGaCCGCGCg- -3'
miRNA:   3'- -GCGgUC-GCGCCUGGGGCcGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 34763 0.74 0.128978
Target:  5'- aGCUGGCGCGGcugcgcGCCgCGGCCGCGgCGc -3'
miRNA:   3'- gCGGUCGCGCC------UGGgGCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 4221 0.74 0.125865
Target:  5'- aGCCcuGCGCGGugC-CGGCgCGCGCCGg -3'
miRNA:   3'- gCGGu-CGCGCCugGgGCCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 126674 0.74 0.125865
Target:  5'- gGCCgAGCGCcGcCCCCGGCCcgGCGCCGc -3'
miRNA:   3'- gCGG-UCGCGcCuGGGGCCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 134511 0.74 0.124032
Target:  5'- gGCCucgggggcggggggaGGCGCGGGCCgCGcGCCGCugCGg -3'
miRNA:   3'- gCGG---------------UCGCGCCUGGgGC-CGGCGugGU- -5'
6683 3' -66.4 NC_001847.1 + 49477 0.74 0.122823
Target:  5'- gCGCCuGCGC--GCCagcaCGGCCGCGCCAa -3'
miRNA:   3'- -GCGGuCGCGccUGGg---GCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 44258 0.74 0.135416
Target:  5'- gCGCCGGCGacugggcaaCGG-CCCCGGCCucgaCACCAg -3'
miRNA:   3'- -GCGGUCGC---------GCCuGGGGCCGGc---GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 113511 0.74 0.122823
Target:  5'- gCGCCcgGGCGCGGcccGCgCCGGCCaaGCGCCGc -3'
miRNA:   3'- -GCGG--UCGCGCC---UGgGGCCGG--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 102783 0.73 0.152825
Target:  5'- aCGCCGGCGCcccccgcgcggGGGCUgggcccccuCCGcGCCGCGCCGc -3'
miRNA:   3'- -GCGGUCGCG-----------CCUGG---------GGC-CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 79222 0.73 0.152458
Target:  5'- aCGCCGGcCGCGGAucacgggcgcgcuCCCCGaGCUGCuaGCCGg -3'
miRNA:   3'- -GCGGUC-GCGCCU-------------GGGGC-CGGCG--UGGU- -5'
6683 3' -66.4 NC_001847.1 + 131667 0.73 0.149188
Target:  5'- cCGCCGGuCGgGGACgCCaUGGCCGCGCa- -3'
miRNA:   3'- -GCGGUC-GCgCCUG-GG-GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 103737 0.73 0.149188
Target:  5'- cCGCCGGCGcCGGGaagCCCGaGcCCGCGCCc -3'
miRNA:   3'- -GCGGUCGC-GCCUg--GGGC-C-GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 57088 0.73 0.149188
Target:  5'- gGCCAGCGCugcgcuGGACCgCCGcgccGCCGCGCgCAu -3'
miRNA:   3'- gCGGUCGCG------CCUGG-GGC----CGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 126914 0.73 0.149188
Target:  5'- aGCUGGCGCGGGuCCCagGGCuCGCACUc -3'
miRNA:   3'- gCGGUCGCGCCU-GGGg-CCG-GCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 103104 0.73 0.14563
Target:  5'- aGCCcGCGCGGGCgCCGuccCCGCGCCc -3'
miRNA:   3'- gCGGuCGCGCCUGgGGCc--GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 52284 0.73 0.143533
Target:  5'- gCGCCGGCuuugugugcgcgaccGCGGGCgCgGGCgGCGCCAa -3'
miRNA:   3'- -GCGGUCG---------------CGCCUGgGgCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 40069 0.73 0.14215
Target:  5'- aCGCCAGCGCcucuaauugcACCCCuuGCCGCGCCGg -3'
miRNA:   3'- -GCGGUCGCGcc--------UGGGGc-CGGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.