miRNA display CGI


Results 81 - 100 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 82824 0.66 0.408163
Target:  5'- -aCCAGCGUGuuUCCCGGuuGgCGCCGc -3'
miRNA:   3'- gcGGUCGCGCcuGGGGCCggC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 766 0.66 0.408163
Target:  5'- gGCCGGCcC--GCCgCCGGCgGCGCCGg -3'
miRNA:   3'- gCGGUCGcGccUGG-GGCCGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 26679 0.66 0.40573
Target:  5'- gCGCCuGgGCGGGCCUUcaaagggucuauaaGGCgaGCACCGu -3'
miRNA:   3'- -GCGGuCgCGCCUGGGG--------------CCGg-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 14438 0.66 0.40009
Target:  5'- uGCCucgacGGCGCcggGGugCgCGGCCGCgGCCu -3'
miRNA:   3'- gCGG-----UCGCG---CCugGgGCCGGCG-UGGu -5'
6683 3' -66.4 NC_001847.1 + 10542 0.66 0.40009
Target:  5'- gGCC--CGgGGACccgcgCCCGGCCgGCGCCGg -3'
miRNA:   3'- gCGGucGCgCCUG-----GGGCCGG-CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 61852 0.67 0.39212
Target:  5'- uCGCCGGCGUaGGCCgCGccuGCCgGCGCCc -3'
miRNA:   3'- -GCGGUCGCGcCUGGgGC---CGG-CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 41497 0.67 0.39212
Target:  5'- gCGCUccaugaccgAGCGUGcaGACguCCgCGGCCGCGCCGg -3'
miRNA:   3'- -GCGG---------UCGCGC--CUG--GG-GCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 58560 0.66 0.416337
Target:  5'- cCGCCAGCgGCGGcgaagaucgggGgCCgGGCCGCcgGCUg -3'
miRNA:   3'- -GCGGUCG-CGCC-----------UgGGgCCGGCG--UGGu -5'
6683 3' -66.4 NC_001847.1 + 27909 0.66 0.423778
Target:  5'- gGCCgagggggcggagGGCGCGGaggacgcggacagGCCUgGGCCGCGgCGc -3'
miRNA:   3'- gCGG------------UCGCGCC-------------UGGGgCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 46925 0.66 0.42461
Target:  5'- gCGUCgGGCcCGGGCUCCgGGCCGCgugcggcgaaGCCAa -3'
miRNA:   3'- -GCGG-UCGcGCCUGGGG-CCGGCG----------UGGU- -5'
6683 3' -66.4 NC_001847.1 + 67301 0.67 0.384254
Target:  5'- gGCCgcGGCGaCGG-CCCUuuuugGGCCGCGCgGa -3'
miRNA:   3'- gCGG--UCGC-GCCuGGGG-----CCGGCGUGgU- -5'
6683 3' -66.4 NC_001847.1 + 73132 0.67 0.376493
Target:  5'- cCGCCGugcuCGCGGACCUggaggaGGCggCGCGCCGg -3'
miRNA:   3'- -GCGGUc---GCGCCUGGGg-----CCG--GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 83708 0.67 0.376493
Target:  5'- uCGCCGuccaugucgcGCGCGGgcgGCUCCGuCUGCGCCGc -3'
miRNA:   3'- -GCGGU----------CGCGCC---UGGGGCcGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 8069 0.67 0.376493
Target:  5'- gCGCCAGCGgGGggGCCUguccaccaCGGCgagGCGCCGa -3'
miRNA:   3'- -GCGGUCGCgCC--UGGG--------GCCGg--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 116359 0.67 0.368839
Target:  5'- cCGCCGcCGCGGAgCUcgcgcuguCGGCCGcCGCCu -3'
miRNA:   3'- -GCGGUcGCGCCUgGG--------GCCGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 104045 0.66 0.441447
Target:  5'- uGCCAcCGCGcugCCCGGCCccaGCGCCGc -3'
miRNA:   3'- gCGGUcGCGCcugGGGCCGG---CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 30780 0.66 0.441447
Target:  5'- gGCCucgcGGCGCGucuucGGCCCgGGCgccuucgcgCGCGCCGa -3'
miRNA:   3'- gCGG----UCGCGC-----CUGGGgCCG---------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 121225 0.66 0.43551
Target:  5'- aCGCCGuCGCGGgccucccggaacuccACCaggaacaCCGGgCGCACCAg -3'
miRNA:   3'- -GCGGUcGCGCC---------------UGG-------GGCCgGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 60803 0.66 0.432981
Target:  5'- gCGCCAccagcGCGCGcGCCUgCGGCagcgGCACCGu -3'
miRNA:   3'- -GCGGU-----CGCGCcUGGG-GCCGg---CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 121991 0.66 0.42461
Target:  5'- uGCCAGCaGCccaACCgCCGGCCGCGg-- -3'
miRNA:   3'- gCGGUCG-CGcc-UGG-GGCCGGCGUggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.