miRNA display CGI


Results 121 - 140 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 82093 0.66 0.42461
Target:  5'- gGCCaAGCGCGGGgCCaGGCuCGgaGCCGa -3'
miRNA:   3'- gCGG-UCGCGCCUgGGgCCG-GCg-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 15190 0.66 0.42461
Target:  5'- gGCUuucugGGCaGCGGACCCgcaCCGCGCCGg -3'
miRNA:   3'- gCGG-----UCG-CGCCUGGGgccGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 58361 0.67 0.368839
Target:  5'- gGCCAgGCGCgGGACgUCGGCCucguagcggGUGCCGg -3'
miRNA:   3'- gCGGU-CGCG-CCUGgGGCCGG---------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 124219 0.67 0.368839
Target:  5'- gCGCCAGC-CGGcucGCCUCGcgguaguaccgcGCCGcCACCAg -3'
miRNA:   3'- -GCGGUCGcGCC---UGGGGC------------CGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 86501 0.67 0.376493
Target:  5'- uGCgGGgGCGGcggcGCCCCGccGCCGCGgCGu -3'
miRNA:   3'- gCGgUCgCGCC----UGGGGC--CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 114147 0.66 0.416337
Target:  5'- aGCCGcGCGCGGugCCgauugggaGGCCuagugcgcGCGCCc -3'
miRNA:   3'- gCGGU-CGCGCCugGGg-------CCGG--------CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 116746 0.66 0.408163
Target:  5'- aCGCCGcgcugugcuucuGCGCGGGgCCUgcugGGuCUGCGCCGa -3'
miRNA:   3'- -GCGGU------------CGCGCCUgGGG----CC-GGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 131137 0.66 0.408163
Target:  5'- uGCUcggGGgGCGGACuguuaaCuuGGCCGCGCUg -3'
miRNA:   3'- gCGG---UCgCGCCUG------GggCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 64120 0.66 0.408163
Target:  5'- uGaCAGaGCGuGCCCaUGGCCGCGCCGa -3'
miRNA:   3'- gCgGUCgCGCcUGGG-GCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 64870 0.66 0.407351
Target:  5'- cCGCCAgGCGCGcGuCCUCGcgguacagcgagaGCgGCACCAg -3'
miRNA:   3'- -GCGGU-CGCGC-CuGGGGC-------------CGgCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 59499 0.66 0.40009
Target:  5'- aCGCCcGCGCcuccGGCUCCGGCauCGCCGu -3'
miRNA:   3'- -GCGGuCGCGc---CUGGGGCCGgcGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 127924 0.66 0.40009
Target:  5'- cCGCugCAGCGCcauGGACggCCCaGCCGCGCUc -3'
miRNA:   3'- -GCG--GUCGCG---CCUG--GGGcCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 65815 0.67 0.39212
Target:  5'- cCGCCAGCaGC--GCCCgaGGcCCGCGCCc -3'
miRNA:   3'- -GCGGUCG-CGccUGGGg-CC-GGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 61852 0.67 0.39212
Target:  5'- uCGCCGGCGUaGGCCgCGccuGCCgGCGCCc -3'
miRNA:   3'- -GCGGUCGCGcCUGGgGC---CGG-CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 96566 0.67 0.391329
Target:  5'- aCGCCAGgagccucCGCGG-CUCCGGCagcagGCGCUg -3'
miRNA:   3'- -GCGGUC-------GCGCCuGGGGCCGg----CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 93701 0.67 0.384254
Target:  5'- -uCCGGUucaUGGGCCCCGGCgacucgcauCGCACCGg -3'
miRNA:   3'- gcGGUCGc--GCCUGGGGCCG---------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 75442 0.67 0.384254
Target:  5'- gGCgAGCGCGGuguUCCCGcuGCCG-ACCGg -3'
miRNA:   3'- gCGgUCGCGCCu--GGGGC--CGGCgUGGU- -5'
6683 3' -66.4 NC_001847.1 + 100524 0.67 0.383473
Target:  5'- gCGCaGGCGcCGGAcuuCCUCGGCgcgccgcCGCGCCAg -3'
miRNA:   3'- -GCGgUCGC-GCCU---GGGGCCG-------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 4382 0.67 0.376493
Target:  5'- cCGCgAGCGCGcGcGCCgCGGCCcagGCGCUg -3'
miRNA:   3'- -GCGgUCGCGC-C-UGGgGCCGG---CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 77749 0.67 0.376493
Target:  5'- cCGCgAGCG-GGACCC--GCCGCACg- -3'
miRNA:   3'- -GCGgUCGCgCCUGGGgcCGGCGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.