miRNA display CGI


Results 141 - 160 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 19538 0.67 0.346523
Target:  5'- aCGgCAGC-CGGACUCCaaGCCGCACgCGa -3'
miRNA:   3'- -GCgGUCGcGCCUGGGGc-CGGCGUG-GU- -5'
6683 3' -66.4 NC_001847.1 + 69698 0.67 0.346523
Target:  5'- gGCCGGCGCucGGuCCgCGGCgCGCggcuGCCGc -3'
miRNA:   3'- gCGGUCGCG--CCuGGgGCCG-GCG----UGGU- -5'
6683 3' -66.4 NC_001847.1 + 112771 0.67 0.368839
Target:  5'- gGCCcGCGgGGGCCUCGucccaguagucuGCCaGCACCu -3'
miRNA:   3'- gCGGuCGCgCCUGGGGC------------CGG-CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 99574 0.67 0.368839
Target:  5'- gGCCAGCcCGGcGCCCucgucgCGGUCGCGCg- -3'
miRNA:   3'- gCGGUCGcGCC-UGGG------GCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 8069 0.67 0.376493
Target:  5'- gCGCCAGCGgGGggGCCUguccaccaCGGCgagGCGCCGa -3'
miRNA:   3'- -GCGGUCGCgCC--UGGG--------GCCGg--CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 77749 0.67 0.376493
Target:  5'- cCGCgAGCG-GGACCC--GCCGCACg- -3'
miRNA:   3'- -GCGgUCGCgCCUGGGgcCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 73132 0.67 0.376493
Target:  5'- cCGCCGugcuCGCGGACCUggaggaGGCggCGCGCCGg -3'
miRNA:   3'- -GCGGUc---GCGCCUGGGg-----CCG--GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 100524 0.67 0.383473
Target:  5'- gCGCaGGCGcCGGAcuuCCUCGGCgcgccgcCGCGCCAg -3'
miRNA:   3'- -GCGgUCGC-GCCU---GGGGCCG-------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 68976 0.67 0.384254
Target:  5'- gGCCcGCGCGGGCa-CGGCCgagaGCACg- -3'
miRNA:   3'- gCGGuCGCGCCUGggGCCGG----CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 133173 0.67 0.384254
Target:  5'- uGCUAccuGCGCGGGCgCgGGCUGC-CCu -3'
miRNA:   3'- gCGGU---CGCGCCUGgGgCCGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 79643 0.67 0.361292
Target:  5'- cCGCCAGCaGCaGGGCCCaCG-UCGC-CCAu -3'
miRNA:   3'- -GCGGUCG-CG-CCUGGG-GCcGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 118944 0.67 0.361292
Target:  5'- aCGCCgcauGGCGCGGGCCaguuccgauUCGGgguCCGCgGCCAa -3'
miRNA:   3'- -GCGG----UCGCGCCUGG---------GGCC---GGCG-UGGU- -5'
6683 3' -66.4 NC_001847.1 + 18540 0.67 0.349442
Target:  5'- uGCCGGCcaggccguaguaGCGGGgCUCGgugaccggcccguguGCCGCGCCAa -3'
miRNA:   3'- gCGGUCG------------CGCCUgGGGC---------------CGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 74988 0.67 0.353853
Target:  5'- uCGCgGGCGUGGcgcACCCCGcguucuucggcGCCGaCGCCc -3'
miRNA:   3'- -GCGgUCGCGCC---UGGGGC-----------CGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 100758 0.67 0.353853
Target:  5'- uGCCgcGGCgGCGGccGCCguuguuUCGGCCGCAUCAg -3'
miRNA:   3'- gCGG--UCG-CGCC--UGG------GGCCGGCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 27106 0.67 0.353853
Target:  5'- uGCC-GCGCGcGCCCCGccggccGCCGCGgCGa -3'
miRNA:   3'- gCGGuCGCGCcUGGGGC------CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 115873 0.67 0.353853
Target:  5'- cCGCaCAGaCGCuGcGCCgCCGGCuCGCGCCGc -3'
miRNA:   3'- -GCG-GUC-GCGcC-UGG-GGCCG-GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 99902 0.67 0.353853
Target:  5'- cCGCC-GCGCGc-CCgCCGGCCGcCugCAg -3'
miRNA:   3'- -GCGGuCGCGCcuGG-GGCCGGC-GugGU- -5'
6683 3' -66.4 NC_001847.1 + 18877 0.67 0.361292
Target:  5'- gGCCAGCGUaGaGGCCgaGGCCccgaucuugaGCACCAc -3'
miRNA:   3'- gCGGUCGCG-C-CUGGggCCGG----------CGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 61253 0.67 0.361292
Target:  5'- gGCCAucgcuGCGCGGGgCgCCGGCggaacugaCGCGCCc -3'
miRNA:   3'- gCGGU-----CGCGCCUgG-GGCCG--------GCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.