miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 15348 0.66 0.922915
Target:  5'- gGGguGCGUGAUggcuUCGAGgcucggCCAgCCUUCg -3'
miRNA:   3'- -UCguCGCGCUG----AGUUCa-----GGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 18495 0.66 0.928379
Target:  5'- cGUAGCGCGcgcgcgccagcaGCUCuggcGAGUUCGU-CUCCa -3'
miRNA:   3'- uCGUCGCGC------------UGAG----UUCAGGUAgGAGG- -5'
6683 5' -54.9 NC_001847.1 + 19278 0.72 0.624565
Target:  5'- cGGCGGCGCGAcCUCcGGUCCcUCgUUg -3'
miRNA:   3'- -UCGUCGCGCU-GAGuUCAGGuAGgAGg -5'
6683 5' -54.9 NC_001847.1 + 20088 0.66 0.922915
Target:  5'- cGCGGCGCGGC-CcGG-CCAUCgCUagcCCg -3'
miRNA:   3'- uCGUCGCGCUGaGuUCaGGUAG-GA---GG- -5'
6683 5' -54.9 NC_001847.1 + 22358 0.7 0.757082
Target:  5'- cGCAGCGC--CUCGGGgcgCCAgUCCUCg -3'
miRNA:   3'- uCGUCGCGcuGAGUUCa--GGU-AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 26391 0.67 0.898601
Target:  5'- aAGCAGCG-GGCg--GGcCCGUCgUCCg -3'
miRNA:   3'- -UCGUCGCgCUGaguUCaGGUAGgAGG- -5'
6683 5' -54.9 NC_001847.1 + 27932 0.73 0.59342
Target:  5'- gGGCGGC-CGuCUCGAGUUCcUCCUCg -3'
miRNA:   3'- -UCGUCGcGCuGAGUUCAGGuAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 28346 0.68 0.847043
Target:  5'- gGGCAGCGCGGC-CG---UCAUCCgCCc -3'
miRNA:   3'- -UCGUCGCGCUGaGUucaGGUAGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 29539 0.7 0.747305
Target:  5'- cGCGGCGCGggcGCUCGAGUUC--CC-CCg -3'
miRNA:   3'- uCGUCGCGC---UGAGUUCAGGuaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 30150 0.75 0.47321
Target:  5'- cGCGGCGCGGCUCGcGGaCCAcccgcUCUUCCc -3'
miRNA:   3'- uCGUCGCGCUGAGU-UCaGGU-----AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 30785 0.69 0.813019
Target:  5'- cGCGGCGCGuCUUcGGcCCGggcgCCUUCg -3'
miRNA:   3'- uCGUCGCGCuGAGuUCaGGUa---GGAGG- -5'
6683 5' -54.9 NC_001847.1 + 31004 0.67 0.898601
Target:  5'- cGCGGCGCuggGGCUCGGGgagCCGgaCUUCg -3'
miRNA:   3'- uCGUCGCG---CUGAGUUCa--GGUagGAGG- -5'
6683 5' -54.9 NC_001847.1 + 31107 0.66 0.917204
Target:  5'- gGGCAGCGCGGuggCAugccuUCgGUCCUCg -3'
miRNA:   3'- -UCGUCGCGCUga-GUuc---AGgUAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 32267 0.66 0.922915
Target:  5'- cGCGuGCGUGGCUCGcG-CCGUCCg-- -3'
miRNA:   3'- uCGU-CGCGCUGAGUuCaGGUAGGagg -5'
6683 5' -54.9 NC_001847.1 + 32675 0.67 0.885
Target:  5'- cGGCGGCGCGggcccGCUCGAG-CUGUgCggcgCCg -3'
miRNA:   3'- -UCGUCGCGC-----UGAGUUCaGGUAgGa---GG- -5'
6683 5' -54.9 NC_001847.1 + 33089 0.7 0.747305
Target:  5'- cGCGGCGCGcaguacagcGCUCGcG-CCAUCCUggCCg -3'
miRNA:   3'- uCGUCGCGC---------UGAGUuCaGGUAGGA--GG- -5'
6683 5' -54.9 NC_001847.1 + 33207 0.67 0.887795
Target:  5'- uGGCGGCGCGggugGCUCGgcuuggcgccgcgccGGgcgCCGcggcgCCUCCg -3'
miRNA:   3'- -UCGUCGCGC----UGAGU---------------UCa--GGUa----GGAGG- -5'
6683 5' -54.9 NC_001847.1 + 34612 0.69 0.776286
Target:  5'- cGGCGGCGCGcCgaggAAGUCCGgcgCCUgCg -3'
miRNA:   3'- -UCGUCGCGCuGag--UUCAGGUa--GGAgG- -5'
6683 5' -54.9 NC_001847.1 + 37347 0.66 0.922915
Target:  5'- uGCGGUcauGCGGCgggUCGAGcCgGUCCUCUc -3'
miRNA:   3'- uCGUCG---CGCUG---AGUUCaGgUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 39372 0.69 0.803164
Target:  5'- cAGCAGCuccGCGACgccgUCGGGgagCCGgcgccggccgggcUCCUCCg -3'
miRNA:   3'- -UCGUCG---CGCUG----AGUUCa--GGU-------------AGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.