miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 89611 0.66 0.928379
Target:  5'- cGCuGCGCGGCaCGGccCCGUCCgcgCCg -3'
miRNA:   3'- uCGuCGCGCUGaGUUcaGGUAGGa--GG- -5'
6683 5' -54.9 NC_001847.1 + 134224 0.67 0.870474
Target:  5'- gGGCGGCGgugggaaGGC-CGGGUCCG-CCUCg -3'
miRNA:   3'- -UCGUCGCg------CUGaGUUCAGGUaGGAGg -5'
6683 5' -54.9 NC_001847.1 + 1286 0.67 0.87785
Target:  5'- uGGCGGCGCGGuggcuggccgcCUCGcccuccacgaAGUCCGgcUCC-CCg -3'
miRNA:   3'- -UCGUCGCGCU-----------GAGU----------UCAGGU--AGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 104798 0.67 0.898601
Target:  5'- cAGCAacGCGCGguGCUCGucGUCCAgCCcgCCg -3'
miRNA:   3'- -UCGU--CGCGC--UGAGUu-CAGGUaGGa-GG- -5'
6683 5' -54.9 NC_001847.1 + 59224 0.66 0.917204
Target:  5'- cGGCGGCGCcaccgcguGCUCGuGUUaCGUCCUCa -3'
miRNA:   3'- -UCGUCGCGc-------UGAGUuCAG-GUAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 4393 0.68 0.855064
Target:  5'- cGCGcCGCGGCcCAGgcgcuGUCCGcgUCCUCCg -3'
miRNA:   3'- uCGUcGCGCUGaGUU-----CAGGU--AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 123099 0.67 0.870474
Target:  5'- cGCAGCGCG-CagGGcGUCCAgCgCUCCg -3'
miRNA:   3'- uCGUCGCGCuGagUU-CAGGUaG-GAGG- -5'
6683 5' -54.9 NC_001847.1 + 1817 0.66 0.922915
Target:  5'- cGCcgAGCGCG-CUCAcGUCCGgcgcgCCcgUCCa -3'
miRNA:   3'- uCG--UCGCGCuGAGUuCAGGUa----GG--AGG- -5'
6683 5' -54.9 NC_001847.1 + 26391 0.67 0.898601
Target:  5'- aAGCAGCG-GGCg--GGcCCGUCgUCCg -3'
miRNA:   3'- -UCGUCGCgCUGaguUCaGGUAGgAGG- -5'
6683 5' -54.9 NC_001847.1 + 126079 0.67 0.898601
Target:  5'- uAGCAGCcuGCG-CUCcaaAAGUCCAUugcccCCUCg -3'
miRNA:   3'- -UCGUCG--CGCuGAG---UUCAGGUA-----GGAGg -5'
6683 5' -54.9 NC_001847.1 + 20088 0.66 0.922915
Target:  5'- cGCGGCGCGGC-CcGG-CCAUCgCUagcCCg -3'
miRNA:   3'- uCGUCGCGCUGaGuUCaGGUAG-GA---GG- -5'
6683 5' -54.9 NC_001847.1 + 15348 0.66 0.922915
Target:  5'- gGGguGCGUGAUggcuUCGAGgcucggCCAgCCUUCg -3'
miRNA:   3'- -UCguCGCGCUG----AGUUCa-----GGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 1928 0.68 0.838821
Target:  5'- cGCGGCGCGgcggccACUCGGG-CCgccggcgcucGUCCUCg -3'
miRNA:   3'- uCGUCGCGC------UGAGUUCaGG----------UAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 78048 0.68 0.853476
Target:  5'- cGGCGGCGCGGC---GGUCCAgcgcagcgcuggCCgCCg -3'
miRNA:   3'- -UCGUCGCGCUGaguUCAGGUa-----------GGaGG- -5'
6683 5' -54.9 NC_001847.1 + 3820 0.67 0.870474
Target:  5'- cGGCGGCGCGcuGC-CGGG-CCAcgCCUCg -3'
miRNA:   3'- -UCGUCGCGC--UGaGUUCaGGUa-GGAGg -5'
6683 5' -54.9 NC_001847.1 + 102156 0.66 0.905045
Target:  5'- cGGCGGCGCGGCccgccgCAAGcUCAgCCgCCa -3'
miRNA:   3'- -UCGUCGCGCUGa-----GUUCaGGUaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 82634 0.66 0.905045
Target:  5'- gGGCcGCGCGGCcgCGcGcUCCGUCagCUCCa -3'
miRNA:   3'- -UCGuCGCGCUGa-GUuC-AGGUAG--GAGG- -5'
6683 5' -54.9 NC_001847.1 + 18495 0.66 0.928379
Target:  5'- cGUAGCGCGcgcgcgccagcaGCUCuggcGAGUUCGU-CUCCa -3'
miRNA:   3'- uCGUCGCGC------------UGAG----UUCAGGUAgGAGG- -5'
6683 5' -54.9 NC_001847.1 + 31004 0.67 0.898601
Target:  5'- cGCGGCGCuggGGCUCGGGgagCCGgaCUUCg -3'
miRNA:   3'- uCGUCGCG---CUGAGUUCa--GGUagGAGG- -5'
6683 5' -54.9 NC_001847.1 + 44297 0.67 0.891918
Target:  5'- cGCGGCGCGGCgcggCGGG-CCAgcgCCa-- -3'
miRNA:   3'- uCGUCGCGCUGa---GUUCaGGUa--GGagg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.