miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 48537 0.7 0.744351
Target:  5'- cGCGGCGCGGCcagCAgcaauggcccgcaaAGUCCAggaugucgugcUCCUCg -3'
miRNA:   3'- uCGUCGCGCUGa--GU--------------UCAGGU-----------AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 29539 0.7 0.747305
Target:  5'- cGCGGCGCGggcGCUCGAGUUC--CC-CCg -3'
miRNA:   3'- uCGUCGCGC---UGAGUUCAGGuaGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 33089 0.7 0.747305
Target:  5'- cGCGGCGCGcaguacagcGCUCGcG-CCAUCCUggCCg -3'
miRNA:   3'- uCGUCGCGC---------UGAGUuCaGGUAGGA--GG- -5'
6683 5' -54.9 NC_001847.1 + 125171 0.7 0.757082
Target:  5'- cGCAGCGC--CUCGGGgcgCCAgUCCUCg -3'
miRNA:   3'- uCGUCGCGcuGAGUUCa--GGU-AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 34612 0.69 0.776286
Target:  5'- cGGCGGCGCGcCgaggAAGUCCGgcgCCUgCg -3'
miRNA:   3'- -UCGUCGCGCuGag--UUCAGGUa--GGAgG- -5'
6683 5' -54.9 NC_001847.1 + 95831 0.69 0.776286
Target:  5'- -cCAGCGCGGCUUcguGUCCGUgCUgCa -3'
miRNA:   3'- ucGUCGCGCUGAGuu-CAGGUAgGAgG- -5'
6683 5' -54.9 NC_001847.1 + 87160 0.69 0.794957
Target:  5'- uGGcCAGCGCGAgcgacagcCUCAa---CAUCCUCCa -3'
miRNA:   3'- -UC-GUCGCGCU--------GAGUucagGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 105516 0.69 0.794957
Target:  5'- cGCGGCGCcccggccCUCAuGUCCuccaCCUCCa -3'
miRNA:   3'- uCGUCGCGcu-----GAGUuCAGGua--GGAGG- -5'
6683 5' -54.9 NC_001847.1 + 52162 0.69 0.804068
Target:  5'- cGGCAGCGCGGg-CAAcaaUCgCGUCUUCCa -3'
miRNA:   3'- -UCGUCGCGCUgaGUUc--AG-GUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 3993 0.69 0.813019
Target:  5'- cGcCAGCGCGGC-CAAGUUaacaGUCCgCCc -3'
miRNA:   3'- uC-GUCGCGCUGaGUUCAGg---UAGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 2655 0.69 0.813019
Target:  5'- uGCGGCgccuucgcccgGCGGCUCGgccggcaucGGcUCGUCCUCCg -3'
miRNA:   3'- uCGUCG-----------CGCUGAGU---------UCaGGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 99463 0.69 0.813019
Target:  5'- cGCAGCGCGccGCUCGGGgCCAagaUCagcgcgaUCCg -3'
miRNA:   3'- uCGUCGCGC--UGAGUUCaGGU---AGg------AGG- -5'
6683 5' -54.9 NC_001847.1 + 133598 0.69 0.813019
Target:  5'- cGCGGCGCGuCUUcGGcCCGggcgCCUUCg -3'
miRNA:   3'- uCGUCGCGCuGAGuUCaGGUa---GGAGG- -5'
6683 5' -54.9 NC_001847.1 + 92740 0.69 0.813019
Target:  5'- cGCAGCGCGuggCAGG-CCAggaCCUCg -3'
miRNA:   3'- uCGUCGCGCugaGUUCaGGUa--GGAGg -5'
6683 5' -54.9 NC_001847.1 + 94455 0.68 0.821801
Target:  5'- cGCAGaC-CGACUCucucGAGUCCA-CCUUCg -3'
miRNA:   3'- uCGUC-GcGCUGAG----UUCAGGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 40017 0.68 0.830404
Target:  5'- cGCAGCgccgGCGACUgCAGGcUCGUCCgcgCCc -3'
miRNA:   3'- uCGUCG----CGCUGA-GUUCaGGUAGGa--GG- -5'
6683 5' -54.9 NC_001847.1 + 106446 0.68 0.838821
Target:  5'- cGCGGCGCGcguacAC-CAGGUCCA-CCagcgCCg -3'
miRNA:   3'- uCGUCGCGC-----UGaGUUCAGGUaGGa---GG- -5'
6683 5' -54.9 NC_001847.1 + 111892 0.68 0.838821
Target:  5'- uGCAGC-CGGCUCGAcGagCA-CCUCCa -3'
miRNA:   3'- uCGUCGcGCUGAGUU-CagGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 104741 0.68 0.838821
Target:  5'- cGCGGCGCGgcggccACUCGGG-CCgccggcgcucGUCCUCg -3'
miRNA:   3'- uCGUCGCGC------UGAGUUCaGG----------UAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 28346 0.68 0.847043
Target:  5'- gGGCAGCGCGGC-CG---UCAUCCgCCc -3'
miRNA:   3'- -UCGUCGCGCUGaGUucaGGUAGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.