miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 5' -54.9 NC_001847.1 + 37347 0.66 0.922915
Target:  5'- uGCGGUcauGCGGCgggUCGAGcCgGUCCUCUc -3'
miRNA:   3'- uCGUCG---CGCUG---AGUUCaGgUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 127098 0.68 0.838821
Target:  5'- gGGCcGCGCGGCuUUggGUCCA-CCgggCUg -3'
miRNA:   3'- -UCGuCGCGCUG-AGuuCAGGUaGGa--GG- -5'
6683 5' -54.9 NC_001847.1 + 53985 0.7 0.747305
Target:  5'- gAGCGGCGCGGCgggCcAGUCgucgcuuaacaCGUCCggUCCg -3'
miRNA:   3'- -UCGUCGCGCUGa--GuUCAG-----------GUAGG--AGG- -5'
6683 5' -54.9 NC_001847.1 + 101189 0.69 0.776286
Target:  5'- cGcCAGCGCG-CUCGGGuucUCCAgcgCCUCg -3'
miRNA:   3'- uC-GUCGCGCuGAGUUC---AGGUa--GGAGg -5'
6683 5' -54.9 NC_001847.1 + 114643 0.68 0.847043
Target:  5'- cGCccGCGaCGACgcgCGAG-CCGUCUUCCu -3'
miRNA:   3'- uCGu-CGC-GCUGa--GUUCaGGUAGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 13712 0.66 0.905045
Target:  5'- cGGCGGCGguCGggccGCUCAacGGcUCCGcCCUCCa -3'
miRNA:   3'- -UCGUCGC--GC----UGAGU--UC-AGGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 20088 0.66 0.922915
Target:  5'- cGCGGCGCGGC-CcGG-CCAUCgCUagcCCg -3'
miRNA:   3'- uCGUCGCGCUGaGuUCaGGUAG-GA---GG- -5'
6683 5' -54.9 NC_001847.1 + 15348 0.66 0.922915
Target:  5'- gGGguGCGUGAUggcuUCGAGgcucggCCAgCCUUCg -3'
miRNA:   3'- -UCguCGCGCUG----AGUUCa-----GGUaGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 126079 0.67 0.898601
Target:  5'- uAGCAGCcuGCG-CUCcaaAAGUCCAUugcccCCUCg -3'
miRNA:   3'- -UCGUCG--CGCuGAG---UUCAGGUA-----GGAGg -5'
6683 5' -54.9 NC_001847.1 + 123177 0.67 0.870474
Target:  5'- cGCGGCgGCG-CUCAGGccgcCCAUCCcuagcggcgUCCa -3'
miRNA:   3'- uCGUCG-CGCuGAGUUCa---GGUAGG---------AGG- -5'
6683 5' -54.9 NC_001847.1 + 1286 0.67 0.87785
Target:  5'- uGGCGGCGCGGuggcuggccgcCUCGcccuccacgaAGUCCGgcUCC-CCg -3'
miRNA:   3'- -UCGUCGCGCU-----------GAGU----------UCAGGU--AGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 104798 0.67 0.898601
Target:  5'- cAGCAacGCGCGguGCUCGucGUCCAgCCcgCCg -3'
miRNA:   3'- -UCGU--CGCGC--UGAGUu-CAGGUaGGa-GG- -5'
6683 5' -54.9 NC_001847.1 + 97888 0.66 0.917204
Target:  5'- cGGCGGCGCGGauggCGAacagcgcgCCGUCCgCCg -3'
miRNA:   3'- -UCGUCGCGCUga--GUUca------GGUAGGaGG- -5'
6683 5' -54.9 NC_001847.1 + 79174 0.69 0.813019
Target:  5'- aGGCAGCGCcACUucuuguccacCAGGUCCGUgaUCUCg -3'
miRNA:   3'- -UCGUCGCGcUGA----------GUUCAGGUA--GGAGg -5'
6683 5' -54.9 NC_001847.1 + 101806 0.69 0.813019
Target:  5'- cAGCAGCGCcacccaGGCcgCGAGgCCGUCUUCg -3'
miRNA:   3'- -UCGUCGCG------CUGa-GUUCaGGUAGGAGg -5'
6683 5' -54.9 NC_001847.1 + 4393 0.68 0.855064
Target:  5'- cGCGcCGCGGCcCAGgcgcuGUCCGcgUCCUCCg -3'
miRNA:   3'- uCGUcGCGCUGaGUU-----CAGGU--AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 2703 0.69 0.794957
Target:  5'- cGCGGCGCcccggccCUCAuGUCCuccaCCUCCa -3'
miRNA:   3'- uCGUCGCGcu-----GAGUuCAGGua--GGAGG- -5'
6683 5' -54.9 NC_001847.1 + 100442 0.77 0.381417
Target:  5'- -cCAGCGCGGCgcgCAAGUCCucgcgccagcgcUCCUCCu -3'
miRNA:   3'- ucGUCGCGCUGa--GUUCAGGu-----------AGGAGG- -5'
6683 5' -54.9 NC_001847.1 + 22358 0.7 0.757082
Target:  5'- cGCAGCGC--CUCGGGgcgCCAgUCCUCg -3'
miRNA:   3'- uCGUCGCGcuGAGUUCa--GGU-AGGAGg -5'
6683 5' -54.9 NC_001847.1 + 42578 0.69 0.804068
Target:  5'- cGGCGGCGCGGuugaUCAAGcUCAUCgUCa -3'
miRNA:   3'- -UCGUCGCGCUg---AGUUCaGGUAGgAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.