miRNA display CGI


Results 61 - 80 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 20868 0.66 0.731064
Target:  5'- cGCUGcgGcGGCgcucuuuauacUGG-GCGGaCGCCCCCg -3'
miRNA:   3'- -CGACuaCuCCG-----------GCUaCGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 48726 0.67 0.665614
Target:  5'- aGCggaagGAcGAGGCggCGGUGCAguaugacucagccgcGCGCCCgCCg -3'
miRNA:   3'- -CGa----CUaCUCCG--GCUACGU---------------CGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 92168 0.67 0.671649
Target:  5'- aGCgaacccGGGCCGGccgGCGGCccGCCCCCc -3'
miRNA:   3'- -CGacuac-UCCGGCUa--CGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 46770 0.67 0.671649
Target:  5'- cGCgc--GGGGCCGGUccGCcGCGCCCgCg -3'
miRNA:   3'- -CGacuaCUCCGGCUA--CGuCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 30910 0.67 0.681679
Target:  5'- --cGGUGAGGCgcgcgccggCGGUGCGGCggagGCCUUCg -3'
miRNA:   3'- cgaCUACUCCG---------GCUACGUCG----CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 1129 0.67 0.681679
Target:  5'- cGCUGGcgagaccgcccgUGAcuguacuGCCGAUGCcgcgcGCGCUCCCa -3'
miRNA:   3'- -CGACU------------ACUc------CGGCUACGu----CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 21867 0.67 0.681679
Target:  5'- uGgUGcgGGGGCUGcgGC-GCGCUgCCg -3'
miRNA:   3'- -CgACuaCUCCGGCuaCGuCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 26291 0.67 0.681679
Target:  5'- cGCUGcggcaaGUGAcucgcGGCgagucgUGggGCAGCGUCCCCa -3'
miRNA:   3'- -CGAC------UACU-----CCG------GCuaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 43302 0.67 0.681679
Target:  5'- gGCUGcgGAGuaCGAaGCGcGCGCUgCCg -3'
miRNA:   3'- -CGACuaCUCcgGCUaCGU-CGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 101788 0.67 0.662594
Target:  5'- uGCUGAgggUGAGGUgCGAggggcccaccgucacGCAGCGCgCCgCCa -3'
miRNA:   3'- -CGACU---ACUCCG-GCUa--------------CGUCGCG-GG-GG- -5'
6684 3' -59.2 NC_001847.1 + 53864 0.67 0.661586
Target:  5'- cGCUGgcGGcGCCGAccgccgcggggGCGGCggGCCCCCc -3'
miRNA:   3'- -CGACuaCUcCGGCUa----------CGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 134190 0.67 0.661586
Target:  5'- -----cGGGuGCCGgcGCAGuCGUCCCCg -3'
miRNA:   3'- cgacuaCUC-CGGCuaCGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 113168 0.67 0.711499
Target:  5'- gGCggcGAgGGGGCCGccGCcGaaaGCCCCCc -3'
miRNA:   3'- -CGa--CUaCUCCGGCuaCGuCg--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 80865 0.67 0.711499
Target:  5'- cGCguc-GAGGCCGuccgGCAGCacGCCCgCg -3'
miRNA:   3'- -CGacuaCUCCGGCua--CGUCG--CGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 115271 0.67 0.711499
Target:  5'- gGUUGGcgGuGGCgGGcuaaGcCGGCGCCCCCg -3'
miRNA:   3'- -CGACUa-CuCCGgCUa---C-GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 45532 0.67 0.701613
Target:  5'- cGCgGAcGGGGCCGugccgcGCAGCGCgUUCa -3'
miRNA:   3'- -CGaCUaCUCCGGCua----CGUCGCGgGGG- -5'
6684 3' -59.2 NC_001847.1 + 134954 0.67 0.701613
Target:  5'- --gGcgGGGGCgGggGCGGgGgCCCCg -3'
miRNA:   3'- cgaCuaCUCCGgCuaCGUCgCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 134839 0.67 0.701613
Target:  5'- aGCUccGgcGGGGCgCGggGaCGGCGCCCgCg -3'
miRNA:   3'- -CGA--CuaCUCCG-GCuaC-GUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 76896 0.67 0.691671
Target:  5'- cCUGAcgGAGGgCGGUcGC-GCGCCgCCg -3'
miRNA:   3'- cGACUa-CUCCgGCUA-CGuCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 91674 0.67 0.691671
Target:  5'- gGCUGcgGcugcGGCUGcgGCuGCGgCUCCCg -3'
miRNA:   3'- -CGACuaCu---CCGGCuaCGuCGC-GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.