Results 101 - 120 of 229 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 53864 | 0.67 | 0.661586 |
Target: 5'- cGCUGgcGGcGCCGAccgccgcggggGCGGCggGCCCCCc -3' miRNA: 3'- -CGACuaCUcCGGCUa----------CGUCG--CGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 101788 | 0.67 | 0.662594 |
Target: 5'- uGCUGAgggUGAGGUgCGAggggcccaccgucacGCAGCGCgCCgCCa -3' miRNA: 3'- -CGACU---ACUCCG-GCUa--------------CGUCGCG-GG-GG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 48726 | 0.67 | 0.665614 |
Target: 5'- aGCggaagGAcGAGGCggCGGUGCAguaugacucagccgcGCGCCCgCCg -3' miRNA: 3'- -CGa----CUaCUCCG--GCUACGU---------------CGCGGG-GG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 92168 | 0.67 | 0.671649 |
Target: 5'- aGCgaacccGGGCCGGccgGCGGCccGCCCCCc -3' miRNA: 3'- -CGacuac-UCCGGCUa--CGUCG--CGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 46770 | 0.67 | 0.671649 |
Target: 5'- cGCgc--GGGGCCGGUccGCcGCGCCCgCg -3' miRNA: 3'- -CGacuaCUCCGGCUA--CGuCGCGGGgG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 88233 | 0.67 | 0.661586 |
Target: 5'- cGCcgGAgccGAGGCCGgcGCGGCGCggggCgCCg -3' miRNA: 3'- -CGa-CUa--CUCCGGCuaCGUCGCG----GgGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 127164 | 0.68 | 0.651501 |
Target: 5'- uGgaGggGGGGcCCGA-GCAGgGCCCUa -3' miRNA: 3'- -CgaCuaCUCC-GGCUaCGUCgCGGGGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 56916 | 0.68 | 0.650491 |
Target: 5'- gGCgGGUGAcuaccgugagcucGGCCGAguuUGCGGCGCUgCa -3' miRNA: 3'- -CGaCUACU-------------CCGGCU---ACGUCGCGGgGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 84854 | 0.68 | 0.648472 |
Target: 5'- aGCUGGUggaaguagucgugcGAGGCgaccgCGAUGCAGCuaGCUgCCa -3' miRNA: 3'- -CGACUA--------------CUCCG-----GCUACGUCG--CGGgGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 34495 | 0.68 | 0.645441 |
Target: 5'- gGCgagGAUgcgagcGAGGCCGAcGCGgacggcgccggcgauGCGCCgCCCg -3' miRNA: 3'- -CGa--CUA------CUCCGGCUaCGU---------------CGCGG-GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 42719 | 0.68 | 0.631293 |
Target: 5'- aUUGAUGcuuaccGGCgCGAguucggGCuGGCGCCCCCc -3' miRNA: 3'- cGACUACu-----CCG-GCUa-----CG-UCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 134240 | 0.68 | 0.631293 |
Target: 5'- gGCggGcgGcGGCCGGcggccGCGGCGgCCCCg -3' miRNA: 3'- -CGa-CuaCuCCGGCUa----CGUCGCgGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 90409 | 0.68 | 0.631293 |
Target: 5'- uGCUuGUGgcGGGCCacGAgGCGGCGCCCUUc -3' miRNA: 3'- -CGAcUAC--UCCGG--CUaCGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 54057 | 0.68 | 0.631293 |
Target: 5'- cGC-GgcGAGGCCGccGcCAGCGCCgUCg -3' miRNA: 3'- -CGaCuaCUCCGGCuaC-GUCGCGGgGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 124997 | 0.68 | 0.651501 |
Target: 5'- uGCUcgGgcGAGaGCUGcaGCAGCGCCuCCCa -3' miRNA: 3'- -CGA--CuaCUC-CGGCuaCGUCGCGG-GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 93070 | 0.68 | 0.621186 |
Target: 5'- -----cGAGGCCGAUGCGcCGCagcggcaccagCCCCa -3' miRNA: 3'- cgacuaCUCCGGCUACGUcGCG-----------GGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 13259 | 0.68 | 0.621186 |
Target: 5'- aGCUGcgcGUGAuGCUGAcUGCGGUGCCggCCCu -3' miRNA: 3'- -CGAC---UACUcCGGCU-ACGUCGCGG--GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 118141 | 0.68 | 0.615125 |
Target: 5'- uGCUGAUcGGcGCCGuUGCcaaggacguccugacGGUGCCCCUc -3' miRNA: 3'- -CGACUAcUC-CGGCuACG---------------UCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 124773 | 0.68 | 0.611087 |
Target: 5'- gGCaccgGggGGGGCUuucgGCGGCgGCCCCCu -3' miRNA: 3'- -CGa---CuaCUCCGGcua-CGUCG-CGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 33213 | 0.68 | 0.648472 |
Target: 5'- cGCgGGUGGcucggcuuggcgccGcGCCGGgcgccGCGGCGCCUCCg -3' miRNA: 3'- -CGaCUACU--------------C-CGGCUa----CGUCGCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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