Results 41 - 60 of 229 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 80529 | 0.71 | 0.464948 |
Target: 5'- cGCUGAaaguagcGGGCgGAuUGCucgcccacGGCGCCCCCg -3' miRNA: 3'- -CGACUac-----UCCGgCU-ACG--------UCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 34642 | 0.71 | 0.446752 |
Target: 5'- cGCgcc-GAGGCCGA-GCGGCGCgCCg -3' miRNA: 3'- -CGacuaCUCCGGCUaCGUCGCGgGGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 51382 | 0.71 | 0.437804 |
Target: 5'- cGCUcGcgGAGGCCGcggucGCGGCGCCgaaCCu -3' miRNA: 3'- -CGA-CuaCUCCGGCua---CGUCGCGGg--GG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 83594 | 0.7 | 0.502445 |
Target: 5'- cGCUGgcGAGcugcGCCGAcgccuggGCGcCGCCCCCg -3' miRNA: 3'- -CGACuaCUC----CGGCUa------CGUcGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 32530 | 0.7 | 0.483522 |
Target: 5'- gGCUGucgGAGG-CGAUGCGcGCGCagCCCu -3' miRNA: 3'- -CGACua-CUCCgGCUACGU-CGCGg-GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 120954 | 0.7 | 0.531412 |
Target: 5'- gGCUGAUGuGGGCgGAccCAGCGCCgCg -3' miRNA: 3'- -CGACUAC-UCCGgCUacGUCGCGGgGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 100855 | 0.7 | 0.531412 |
Target: 5'- cGCUGAc--GGCCGcgagcGCGGCGCCCagCCg -3' miRNA: 3'- -CGACUacuCCGGCua---CGUCGCGGG--GG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 123632 | 0.7 | 0.502445 |
Target: 5'- -------cGGCCGggGCGGCGCCCUUg -3' miRNA: 3'- cgacuacuCCGGCuaCGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 74753 | 0.7 | 0.483522 |
Target: 5'- gGCUGGgagacGcGGUCGgcGC-GCGCCCCCu -3' miRNA: 3'- -CGACUa----CuCCGGCuaCGuCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 91724 | 0.7 | 0.483522 |
Target: 5'- cGCgacgcGAGGCCcagcUGCAGCGCCCUg -3' miRNA: 3'- -CGacua-CUCCGGcu--ACGUCGCGGGGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 32212 | 0.7 | 0.483522 |
Target: 5'- cGCgGgcGGGGCCGggGCgcggGGCGCCggaCCCa -3' miRNA: 3'- -CGaCuaCUCCGGCuaCG----UCGCGG---GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 68921 | 0.7 | 0.492942 |
Target: 5'- cGCUGAgguucggcgcgGcGGCCGcggGCuGCGCCUCCa -3' miRNA: 3'- -CGACUa----------CuCCGGCua-CGuCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 78857 | 0.7 | 0.502445 |
Target: 5'- aGCUGGUGu-GCucgCGGUGC-GCGCCCUCg -3' miRNA: 3'- -CGACUACucCG---GCUACGuCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 127704 | 0.7 | 0.502445 |
Target: 5'- --gGGUGcGGGCCGcUGCAaguaCGCCCCCc -3' miRNA: 3'- cgaCUAC-UCCGGCuACGUc---GCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 88779 | 0.7 | 0.492942 |
Target: 5'- uGCUGGUGuccGCCGA-GgAGC-CCCCCg -3' miRNA: 3'- -CGACUACuc-CGGCUaCgUCGcGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 24891 | 0.7 | 0.502445 |
Target: 5'- --gGGUGcGGGCCGcUGCAaguaCGCCCCCc -3' miRNA: 3'- cgaCUAC-UCCGGCuACGUc---GCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 96420 | 0.7 | 0.492942 |
Target: 5'- -aUGgcGGGGCCGGcgGCAgGCGCggCCCCg -3' miRNA: 3'- cgACuaCUCCGGCUa-CGU-CGCG--GGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 11207 | 0.7 | 0.492942 |
Target: 5'- gGCUGGUcGAGGuuGAaGUGGgGCCUCUg -3' miRNA: 3'- -CGACUA-CUCCggCUaCGUCgCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 135025 | 0.7 | 0.483522 |
Target: 5'- cGCgGgcGGGGCCGggGCgcggGGCGCCggaCCCa -3' miRNA: 3'- -CGaCuaCUCCGGCuaCG----UCGCGG---GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 47909 | 0.7 | 0.502445 |
Target: 5'- cGCggcGGUGAGcGCUGc-GCAGCGCUUCCa -3' miRNA: 3'- -CGa--CUACUC-CGGCuaCGUCGCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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