Results 61 - 80 of 229 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 68603 | 0.69 | 0.551055 |
Target: 5'- aGUUGGcuacGGCgCGGUcGCuGCGCCCCCa -3' miRNA: 3'- -CGACUacu-CCG-GCUA-CGuCGCGGGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 58735 | 0.69 | 0.551055 |
Target: 5'- cGCggGGUGcccccGCCGcgGCccccGGCGCCCCCc -3' miRNA: 3'- -CGa-CUACuc---CGGCuaCG----UCGCGGGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 2459 | 0.69 | 0.560961 |
Target: 5'- aGCUcccGAUcGA-GCgGGcgGCGGCGCCCCCg -3' miRNA: 3'- -CGA---CUA-CUcCGgCUa-CGUCGCGGGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 18511 | 0.69 | 0.590942 |
Target: 5'- gGCUGccGAGGCCagcgcUGCGggcGCGCCgCCg -3' miRNA: 3'- -CGACuaCUCCGGcu---ACGU---CGCGGgGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 76402 | 0.69 | 0.590942 |
Target: 5'- gGCgccgGGGGCCGcgGCgGGgGCaCCCCg -3' miRNA: 3'- -CGacuaCUCCGGCuaCG-UCgCG-GGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 118127 | 0.69 | 0.570914 |
Target: 5'- gGC-GgcGAGGCCGucUGCGaggcgcgcuGCGUCCCCg -3' miRNA: 3'- -CGaCuaCUCCGGCu-ACGU---------CGCGGGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 120189 | 0.69 | 0.58091 |
Target: 5'- uGgUGGUGcuGGCCGcgcgaGCGGCGCCCgCu -3' miRNA: 3'- -CgACUACu-CCGGCua---CGUCGCGGGgG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 102690 | 0.69 | 0.570914 |
Target: 5'- cGCUGgcGGGcguguGCUGcgGCAGCGCCUgggCCa -3' miRNA: 3'- -CGACuaCUC-----CGGCuaCGUCGCGGG---GG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 29397 | 0.69 | 0.541203 |
Target: 5'- cGCUGGaGGcGGCCGcgcugGCGGCGCggaccguggCCCCg -3' miRNA: 3'- -CGACUaCU-CCGGCua---CGUCGCG---------GGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 3980 | 0.69 | 0.551055 |
Target: 5'- gGCgccgGGGGCCGG-GCGcGCGgCCCCg -3' miRNA: 3'- -CGacuaCUCCGGCUaCGU-CGCgGGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 48624 | 0.69 | 0.590942 |
Target: 5'- uGCcGAUGugaacGCCGcgGCGGCggggcgccgccGCCCCCg -3' miRNA: 3'- -CGaCUACuc---CGGCuaCGUCG-----------CGGGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 117269 | 0.69 | 0.590942 |
Target: 5'- uCUGcgGGGccGCCGuuuUGgGGCGCCCCg -3' miRNA: 3'- cGACuaCUC--CGGCu--ACgUCGCGGGGg -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 132835 | 0.69 | 0.541203 |
Target: 5'- cGCgUGcUGGGGCCcAUGCcgcccGGCGgCCCCg -3' miRNA: 3'- -CG-ACuACUCCGGcUACG-----UCGCgGGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 87686 | 0.69 | 0.570914 |
Target: 5'- gGCgc-UGGGGCUGcUGCGGCGCCgCg -3' miRNA: 3'- -CGacuACUCCGGCuACGUCGCGGgGg -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 132210 | 0.69 | 0.541203 |
Target: 5'- cGCUGGaGGcGGCCGcgcugGCGGCGCggaccguggCCCCg -3' miRNA: 3'- -CGACUaCU-CCGGCua---CGUCGCG---------GGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 15393 | 0.69 | 0.590942 |
Target: 5'- gGCgucgGGgcUGGGGCCGGguuucgGCucgcccucGGCGCCUCCg -3' miRNA: 3'- -CGa---CU--ACUCCGGCUa-----CG--------UCGCGGGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 105572 | 0.69 | 0.590942 |
Target: 5'- cGCgGcgGc-GCCGgcGcCGGCGCCCCCg -3' miRNA: 3'- -CGaCuaCucCGGCuaC-GUCGCGGGGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 75813 | 0.69 | 0.551055 |
Target: 5'- --cGAUGccGGGCUGGUaCGGCGCCgCCg -3' miRNA: 3'- cgaCUAC--UCCGGCUAcGUCGCGGgGG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 120830 | 0.69 | 0.560961 |
Target: 5'- cGCUcGAUGAGGCCccGAgagGCGGCcgGCCaCgCCa -3' miRNA: 3'- -CGA-CUACUCCGG--CUa--CGUCG--CGG-G-GG- -5' |
|||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 42542 | 0.69 | 0.590942 |
Target: 5'- uGCUcGGUGAGGgCGAggacgcgGCcGCGUCCUCc -3' miRNA: 3'- -CGA-CUACUCCgGCUa------CGuCGCGGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home