miRNA display CGI


Results 81 - 100 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 18511 0.69 0.590942
Target:  5'- gGCUGccGAGGCCagcgcUGCGggcGCGCCgCCg -3'
miRNA:   3'- -CGACuaCUCCGGcu---ACGU---CGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 132835 0.69 0.541203
Target:  5'- cGCgUGcUGGGGCCcAUGCcgcccGGCGgCCCCg -3'
miRNA:   3'- -CG-ACuACUCCGGcUACG-----UCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 132210 0.69 0.541203
Target:  5'- cGCUGGaGGcGGCCGcgcugGCGGCGCggaccguggCCCCg -3'
miRNA:   3'- -CGACUaCU-CCGGCua---CGUCGCG---------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 6758 0.69 0.551055
Target:  5'- uGC-GGUGcGGCCGGUGCgaGGCGCCagcugcUCCg -3'
miRNA:   3'- -CGaCUACuCCGGCUACG--UCGCGG------GGG- -5'
6684 3' -59.2 NC_001847.1 + 30022 0.69 0.541203
Target:  5'- cGCgUGcUGGGGCCcAUGCcgcccGGCGgCCCCg -3'
miRNA:   3'- -CG-ACuACUCCGGcUACG-----UCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 3980 0.69 0.551055
Target:  5'- gGCgccgGGGGCCGG-GCGcGCGgCCCCg -3'
miRNA:   3'- -CGacuaCUCCGGCUaCGU-CGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 84854 0.68 0.648472
Target:  5'- aGCUGGUggaaguagucgugcGAGGCgaccgCGAUGCAGCuaGCUgCCa -3'
miRNA:   3'- -CGACUA--------------CUCCG-----GCUACGUCG--CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 59058 0.68 0.611087
Target:  5'- uGgUGGUGAGGCgGcagcucgGCuggcGCGCCCUCg -3'
miRNA:   3'- -CgACUACUCCGgCua-----CGu---CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 24994 0.68 0.607051
Target:  5'- uGUUGAUGGccauGGCCaucGAguccagcagcuuCAGCGCCCCCa -3'
miRNA:   3'- -CGACUACU----CCGG---CUac----------GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 127164 0.68 0.651501
Target:  5'- uGgaGggGGGGcCCGA-GCAGgGCCCUa -3'
miRNA:   3'- -CgaCuaCUCC-GGCUaCGUCgCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 124997 0.68 0.651501
Target:  5'- uGCUcgGgcGAGaGCUGcaGCAGCGCCuCCCa -3'
miRNA:   3'- -CGA--CuaCUC-CGGCuaCGUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 56916 0.68 0.650491
Target:  5'- gGCgGGUGAcuaccgugagcucGGCCGAguuUGCGGCGCUgCa -3'
miRNA:   3'- -CGaCUACU-------------CCGGCU---ACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 34495 0.68 0.645441
Target:  5'- gGCgagGAUgcgagcGAGGCCGAcGCGgacggcgccggcgauGCGCCgCCCg -3'
miRNA:   3'- -CGa--CUA------CUCCGGCUaCGU---------------CGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 42719 0.68 0.631293
Target:  5'- aUUGAUGcuuaccGGCgCGAguucggGCuGGCGCCCCCc -3'
miRNA:   3'- cGACUACu-----CCG-GCUa-----CG-UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 90409 0.68 0.631293
Target:  5'- uGCUuGUGgcGGGCCacGAgGCGGCGCCCUUc -3'
miRNA:   3'- -CGAcUAC--UCCGG--CUaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 54057 0.68 0.631293
Target:  5'- cGC-GgcGAGGCCGccGcCAGCGCCgUCg -3'
miRNA:   3'- -CGaCuaCUCCGGCuaC-GUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 33213 0.68 0.648472
Target:  5'- cGCgGGUGGcucggcuuggcgccGcGCCGGgcgccGCGGCGCCUCCg -3'
miRNA:   3'- -CGaCUACU--------------C-CGGCUa----CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 93070 0.68 0.621186
Target:  5'- -----cGAGGCCGAUGCGcCGCagcggcaccagCCCCa -3'
miRNA:   3'- cgacuaCUCCGGCUACGUcGCG-----------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 118141 0.68 0.615125
Target:  5'- uGCUGAUcGGcGCCGuUGCcaaggacguccugacGGUGCCCCUc -3'
miRNA:   3'- -CGACUAcUC-CGGCuACG---------------UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 13259 0.68 0.621186
Target:  5'- aGCUGcgcGUGAuGCUGAcUGCGGUGCCggCCCu -3'
miRNA:   3'- -CGAC---UACUcCGGCU-ACGUCGCGG--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.