Results 101 - 120 of 229 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 124997 | 0.68 | 0.651501 |
Target: 5'- uGCUcgGgcGAGaGCUGcaGCAGCGCCuCCCa -3' miRNA: 3'- -CGA--CuaCUC-CGGCuaCGUCGCGG-GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 33213 | 0.68 | 0.648472 |
Target: 5'- cGCgGGUGGcucggcuuggcgccGcGCCGGgcgccGCGGCGCCUCCg -3' miRNA: 3'- -CGaCUACU--------------C-CGGCUa----CGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 84854 | 0.68 | 0.648472 |
Target: 5'- aGCUGGUggaaguagucgugcGAGGCgaccgCGAUGCAGCuaGCUgCCa -3' miRNA: 3'- -CGACUA--------------CUCCG-----GCUACGUCG--CGGgGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 34495 | 0.68 | 0.645441 |
Target: 5'- gGCgagGAUgcgagcGAGGCCGAcGCGgacggcgccggcgauGCGCCgCCCg -3' miRNA: 3'- -CGa--CUA------CUCCGGCUaCGU---------------CGCGG-GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 42719 | 0.68 | 0.631293 |
Target: 5'- aUUGAUGcuuaccGGCgCGAguucggGCuGGCGCCCCCc -3' miRNA: 3'- cGACUACu-----CCG-GCUa-----CG-UCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 90409 | 0.68 | 0.631293 |
Target: 5'- uGCUuGUGgcGGGCCacGAgGCGGCGCCCUUc -3' miRNA: 3'- -CGAcUAC--UCCGG--CUaCGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 54057 | 0.68 | 0.631293 |
Target: 5'- cGC-GgcGAGGCCGccGcCAGCGCCgUCg -3' miRNA: 3'- -CGaCuaCUCCGGCuaC-GUCGCGGgGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 134240 | 0.68 | 0.631293 |
Target: 5'- gGCggGcgGcGGCCGGcggccGCGGCGgCCCCg -3' miRNA: 3'- -CGa-CuaCuCCGGCUa----CGUCGCgGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 118141 | 0.68 | 0.615125 |
Target: 5'- uGCUGAUcGGcGCCGuUGCcaaggacguccugacGGUGCCCCUc -3' miRNA: 3'- -CGACUAcUC-CGGCuACG---------------UCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 124773 | 0.68 | 0.611087 |
Target: 5'- gGCaccgGggGGGGCUuucgGCGGCgGCCCCCu -3' miRNA: 3'- -CGa---CuaCUCCGGcua-CGUCG-CGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 59058 | 0.68 | 0.611087 |
Target: 5'- uGgUGGUGAGGCgGcagcucgGCuggcGCGCCCUCg -3' miRNA: 3'- -CgACUACUCCGgCua-----CGu---CGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 84308 | 0.68 | 0.598989 |
Target: 5'- aGCgccccccGGCgCGG-GCAGCGCCCCCc -3' miRNA: 3'- -CGacuacu-CCG-GCUaCGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 124392 | 0.68 | 0.601003 |
Target: 5'- gGCggGAgagGGGGCCGcgggGCccCGCCCCCc -3' miRNA: 3'- -CGa-CUa--CUCCGGCua--CGucGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 24994 | 0.68 | 0.607051 |
Target: 5'- uGUUGAUGGccauGGCCaucGAguccagcagcuuCAGCGCCCCCa -3' miRNA: 3'- -CGACUACU----CCGG---CUac----------GUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 56916 | 0.68 | 0.650491 |
Target: 5'- gGCgGGUGAcuaccgugagcucGGCCGAguuUGCGGCGCUgCa -3' miRNA: 3'- -CGaCUACU-------------CCGGCU---ACGUCGCGGgGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 4870 | 0.68 | 0.601003 |
Target: 5'- --gGggGGGGCggCGGgcagcgGCAGgGCCCCCg -3' miRNA: 3'- cgaCuaCUCCG--GCUa-----CGUCgCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 52119 | 0.68 | 0.601003 |
Target: 5'- aGCgGccGcGGGCCG--GCGGCGCCCCa -3' miRNA: 3'- -CGaCuaC-UCCGGCuaCGUCGCGGGGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 21579 | 0.68 | 0.601003 |
Target: 5'- gGCggGAgagGGGGCCGcgggGCccCGCCCCCc -3' miRNA: 3'- -CGa-CUa--CUCCGGCua--CGucGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 90491 | 0.68 | 0.601003 |
Target: 5'- --cGGUGcAGGCgGG-GCAGCaGCCUCCg -3' miRNA: 3'- cgaCUAC-UCCGgCUaCGUCG-CGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 33917 | 0.68 | 0.611087 |
Target: 5'- uGCUcGggGAGGCUGGccuccccgugUGCAG-GCCCgCCg -3' miRNA: 3'- -CGA-CuaCUCCGGCU----------ACGUCgCGGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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