miRNA display CGI


Results 121 - 140 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 51516 0.68 0.651501
Target:  5'- cGCcGGUGcggcgccggcAGGCgGggGCGGCGCCCa- -3'
miRNA:   3'- -CGaCUAC----------UCCGgCuaCGUCGCGGGgg -5'
6684 3' -59.2 NC_001847.1 + 24994 0.68 0.607051
Target:  5'- uGUUGAUGGccauGGCCaucGAguccagcagcuuCAGCGCCCCCa -3'
miRNA:   3'- -CGACUACU----CCGG---CUac----------GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 24351 0.68 0.651501
Target:  5'- uGgaGggGGGGcCCGA-GCAGgGCCCUa -3'
miRNA:   3'- -CgaCuaCUCC-GGCUaCGUCgCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 26291 0.67 0.681679
Target:  5'- cGCUGcggcaaGUGAcucgcGGCgagucgUGggGCAGCGUCCCCa -3'
miRNA:   3'- -CGAC------UACU-----CCG------GCuaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 113168 0.67 0.711499
Target:  5'- gGCggcGAgGGGGCCGccGCcGaaaGCCCCCc -3'
miRNA:   3'- -CGa--CUaCUCCGGCuaCGuCg--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 31377 0.67 0.661586
Target:  5'- -----cGGGuGCCGgcGCAGuCGUCCCCg -3'
miRNA:   3'- cgacuaCUC-CGGCuaCGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 39577 0.67 0.715435
Target:  5'- uUUGGUG-GGCCaGGuggccccagcgcugcUGCGGCGCggCCCCa -3'
miRNA:   3'- cGACUACuCCGG-CU---------------ACGUCGCG--GGGG- -5'
6684 3' -59.2 NC_001847.1 + 54664 0.67 0.661586
Target:  5'- cGCUGcgGAacggggagcgcGGCCcgacggcgGcgGCGGCGCCCgCg -3'
miRNA:   3'- -CGACuaCU-----------CCGG--------CuaCGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 80865 0.67 0.711499
Target:  5'- cGCguc-GAGGCCGuccgGCAGCacGCCCgCg -3'
miRNA:   3'- -CGacuaCUCCGGCua--CGUCG--CGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 131316 0.67 0.711499
Target:  5'- uCUGgcGAGGCgUGGcccgGCAGCGCgCCgCCg -3'
miRNA:   3'- cGACuaCUCCG-GCUa---CGUCGCG-GG-GG- -5'
6684 3' -59.2 NC_001847.1 + 115271 0.67 0.711499
Target:  5'- gGUUGGcgGuGGCgGGcuaaGcCGGCGCCCCCg -3'
miRNA:   3'- -CGACUa-CuCCGgCUa---C-GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 39850 0.67 0.660578
Target:  5'- cCUGGaGGcgccagcGGCCGcaagcuUGcCGGCGCCCCCg -3'
miRNA:   3'- cGACUaCU-------CCGGCu-----AC-GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 93748 0.67 0.659571
Target:  5'- aGCUG--GAGGCCGcgcggcugccgGCGGCGgCCCg -3'
miRNA:   3'- -CGACuaCUCCGGCua---------CGUCGCgGGGg -5'
6684 3' -59.2 NC_001847.1 + 91674 0.67 0.691671
Target:  5'- gGCUGcgGcugcGGCUGcgGCuGCGgCUCCCg -3'
miRNA:   3'- -CGACuaCu---CCGGCuaCGuCGC-GGGGG- -5'
6684 3' -59.2 NC_001847.1 + 74135 0.67 0.691671
Target:  5'- uGCUGcgcGUGGcGCCGGggcgaaugaugGCGGCGCCUCUc -3'
miRNA:   3'- -CGAC---UACUcCGGCUa----------CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 76896 0.67 0.691671
Target:  5'- cCUGAcgGAGGgCGGUcGC-GCGCCgCCg -3'
miRNA:   3'- cGACUa-CUCCgGCUA-CGuCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 134839 0.67 0.701613
Target:  5'- aGCUccGgcGGGGCgCGggGaCGGCGCCCgCg -3'
miRNA:   3'- -CGA--CuaCUCCG-GCuaC-GUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 43302 0.67 0.681679
Target:  5'- gGCUGcgGAGuaCGAaGCGcGCGCUgCCg -3'
miRNA:   3'- -CGACuaCUCcgGCUaCGU-CGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 134954 0.67 0.701613
Target:  5'- --gGcgGGGGCgGggGCGGgGgCCCCg -3'
miRNA:   3'- cgaCuaCUCCGgCuaCGUCgCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 45532 0.67 0.701613
Target:  5'- cGCgGAcGGGGCCGugccgcGCAGCGCgUUCa -3'
miRNA:   3'- -CGaCUaCUCCGGCua----CGUCGCGgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.