miRNA display CGI


Results 61 - 80 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 30022 0.69 0.541203
Target:  5'- cGCgUGcUGGGGCCcAUGCcgcccGGCGgCCCCg -3'
miRNA:   3'- -CG-ACuACUCCGGcUACG-----UCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 29397 0.69 0.541203
Target:  5'- cGCUGGaGGcGGCCGcgcugGCGGCGCggaccguggCCCCg -3'
miRNA:   3'- -CGACUaCU-CCGGCua---CGUCGCG---------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 132210 0.69 0.541203
Target:  5'- cGCUGGaGGcGGCCGcgcugGCGGCGCggaccguggCCCCg -3'
miRNA:   3'- -CGACUaCU-CCGGCua---CGUCGCG---------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 132835 0.69 0.541203
Target:  5'- cGCgUGcUGGGGCCcAUGCcgcccGGCGgCCCCg -3'
miRNA:   3'- -CG-ACuACUCCGGcUACG-----UCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 58735 0.69 0.551055
Target:  5'- cGCggGGUGcccccGCCGcgGCccccGGCGCCCCCc -3'
miRNA:   3'- -CGa-CUACuc---CGGCuaCG----UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 36663 0.69 0.551055
Target:  5'- cGCaGGUGGGGgcuUCGAUGC-GC-CCCCCg -3'
miRNA:   3'- -CGaCUACUCC---GGCUACGuCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 68603 0.69 0.551055
Target:  5'- aGUUGGcuacGGCgCGGUcGCuGCGCCCCCa -3'
miRNA:   3'- -CGACUacu-CCG-GCUA-CGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 3980 0.69 0.551055
Target:  5'- gGCgccgGGGGCCGG-GCGcGCGgCCCCg -3'
miRNA:   3'- -CGacuaCUCCGGCUaCGU-CGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 75813 0.69 0.551055
Target:  5'- --cGAUGccGGGCUGGUaCGGCGCCgCCg -3'
miRNA:   3'- cgaCUAC--UCCGGCUAcGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 6758 0.69 0.551055
Target:  5'- uGC-GGUGcGGCCGGUGCgaGGCGCCagcugcUCCg -3'
miRNA:   3'- -CGaCUACuCCGGCUACG--UCGCGG------GGG- -5'
6684 3' -59.2 NC_001847.1 + 120830 0.69 0.560961
Target:  5'- cGCUcGAUGAGGCCccGAgagGCGGCcgGCCaCgCCa -3'
miRNA:   3'- -CGA-CUACUCCGG--CUa--CGUCG--CGG-G-GG- -5'
6684 3' -59.2 NC_001847.1 + 2459 0.69 0.560961
Target:  5'- aGCUcccGAUcGA-GCgGGcgGCGGCGCCCCCg -3'
miRNA:   3'- -CGA---CUA-CUcCGgCUa-CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 37059 0.69 0.569917
Target:  5'- gGCUGggGGcGGCUGGUGCAcGCgguacugGCCCgCCu -3'
miRNA:   3'- -CGACuaCU-CCGGCUACGU-CG-------CGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 118127 0.69 0.570914
Target:  5'- gGC-GgcGAGGCCGucUGCGaggcgcgcuGCGUCCCCg -3'
miRNA:   3'- -CGaCuaCUCCGGCu-ACGU---------CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 102690 0.69 0.570914
Target:  5'- cGCUGgcGGGcguguGCUGcgGCAGCGCCUgggCCa -3'
miRNA:   3'- -CGACuaCUC-----CGGCuaCGUCGCGGG---GG- -5'
6684 3' -59.2 NC_001847.1 + 87686 0.69 0.570914
Target:  5'- gGCgc-UGGGGCUGcUGCGGCGCCgCg -3'
miRNA:   3'- -CGacuACUCCGGCuACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 120189 0.69 0.58091
Target:  5'- uGgUGGUGcuGGCCGcgcgaGCGGCGCCCgCu -3'
miRNA:   3'- -CgACUACu-CCGGCua---CGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 18511 0.69 0.590942
Target:  5'- gGCUGccGAGGCCagcgcUGCGggcGCGCCgCCg -3'
miRNA:   3'- -CGACuaCUCCGGcu---ACGU---CGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 117269 0.69 0.590942
Target:  5'- uCUGcgGGGccGCCGuuuUGgGGCGCCCCg -3'
miRNA:   3'- cGACuaCUC--CGGCu--ACgUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 105572 0.69 0.590942
Target:  5'- cGCgGcgGc-GCCGgcGcCGGCGCCCCCg -3'
miRNA:   3'- -CGaCuaCucCGGCuaC-GUCGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.