miRNA display CGI


Results 101 - 120 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 44950 0.68 0.621186
Target:  5'- gGCUGGgcGAcGGCgCGccGCAGCaGCCCCg -3'
miRNA:   3'- -CGACUa-CU-CCG-GCuaCGUCG-CGGGGg -5'
6684 3' -59.2 NC_001847.1 + 73018 0.68 0.621186
Target:  5'- cGCgGAaccAGGCCGcgGCAGCGgCCgCg -3'
miRNA:   3'- -CGaCUac-UCCGGCuaCGUCGCgGGgG- -5'
6684 3' -59.2 NC_001847.1 + 66165 0.68 0.621186
Target:  5'- cGCUGucucccGGGCUGgcGcCGGcCGCCCCCu -3'
miRNA:   3'- -CGACuac---UCCGGCuaC-GUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 93070 0.68 0.621186
Target:  5'- -----cGAGGCCGAUGCGcCGCagcggcaccagCCCCa -3'
miRNA:   3'- cgacuaCUCCGGCUACGUcGCG-----------GGGG- -5'
6684 3' -59.2 NC_001847.1 + 13259 0.68 0.621186
Target:  5'- aGCUGcgcGUGAuGCUGAcUGCGGUGCCggCCCu -3'
miRNA:   3'- -CGAC---UACUcCGGCU-ACGUCGCGG--GGG- -5'
6684 3' -59.2 NC_001847.1 + 90409 0.68 0.631293
Target:  5'- uGCUuGUGgcGGGCCacGAgGCGGCGCCCUUc -3'
miRNA:   3'- -CGAcUAC--UCCGG--CUaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 42719 0.68 0.631293
Target:  5'- aUUGAUGcuuaccGGCgCGAguucggGCuGGCGCCCCCc -3'
miRNA:   3'- cGACUACu-----CCG-GCUa-----CG-UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 134240 0.68 0.631293
Target:  5'- gGCggGcgGcGGCCGGcggccGCGGCGgCCCCg -3'
miRNA:   3'- -CGa-CuaCuCCGGCUa----CGUCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 13862 0.68 0.631293
Target:  5'- cGCUGAUGGuGGCgaGggGgGGCGCCUUUg -3'
miRNA:   3'- -CGACUACU-CCGg-CuaCgUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 31427 0.68 0.631293
Target:  5'- gGCggGcgGcGGCCGGcggccGCGGCGgCCCCg -3'
miRNA:   3'- -CGa-CuaCuCCGGCUa----CGUCGCgGGGG- -5'
6684 3' -59.2 NC_001847.1 + 54057 0.68 0.631293
Target:  5'- cGC-GgcGAGGCCGccGcCAGCGCCgUCg -3'
miRNA:   3'- -CGaCuaCUCCGGCuaC-GUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 115371 0.68 0.631293
Target:  5'- uGCUGAUGAcuGcGCCGA-GCc-CGCaCCCCg -3'
miRNA:   3'- -CGACUACU--C-CGGCUaCGucGCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 69882 0.68 0.638368
Target:  5'- cGCUGcgGAccGGCCGcggGCccggguggcggaaaAGCGCCgCCCc -3'
miRNA:   3'- -CGACuaCU--CCGGCua-CG--------------UCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 34495 0.68 0.645441
Target:  5'- gGCgagGAUgcgagcGAGGCCGAcGCGgacggcgccggcgauGCGCCgCCCg -3'
miRNA:   3'- -CGa--CUA------CUCCGGCUaCGU---------------CGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 84854 0.68 0.648472
Target:  5'- aGCUGGUggaaguagucgugcGAGGCgaccgCGAUGCAGCuaGCUgCCa -3'
miRNA:   3'- -CGACUA--------------CUCCG-----GCUACGUCG--CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 33213 0.68 0.648472
Target:  5'- cGCgGGUGGcucggcuuggcgccGcGCCGGgcgccGCGGCGCCUCCg -3'
miRNA:   3'- -CGaCUACU--------------C-CGGCUa----CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 56916 0.68 0.650491
Target:  5'- gGCgGGUGAcuaccgugagcucGGCCGAguuUGCGGCGCUgCa -3'
miRNA:   3'- -CGaCUACU-------------CCGGCU---ACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 127164 0.68 0.651501
Target:  5'- uGgaGggGGGGcCCGA-GCAGgGCCCUa -3'
miRNA:   3'- -CgaCuaCUCC-GGCUaCGUCgCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 24351 0.68 0.651501
Target:  5'- uGgaGggGGGGcCCGA-GCAGgGCCCUa -3'
miRNA:   3'- -CgaCuaCUCC-GGCUaCGUCgCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 22184 0.68 0.651501
Target:  5'- uGCUcgGgcGAGaGCUGcaGCAGCGCCuCCCa -3'
miRNA:   3'- -CGA--CuaCUC-CGGCuaCGUCGCGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.