miRNA display CGI


Results 121 - 140 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 124997 0.68 0.651501
Target:  5'- uGCUcgGgcGAGaGCUGcaGCAGCGCCuCCCa -3'
miRNA:   3'- -CGA--CuaCUC-CGGCuaCGUCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 127164 0.68 0.651501
Target:  5'- uGgaGggGGGGcCCGA-GCAGgGCCCUa -3'
miRNA:   3'- -CgaCuaCUCC-GGCUaCGUCgCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 116449 0.68 0.651501
Target:  5'- cGCUGGcggUGAcgcgGGCCGugcUGCGGgGCCUCg -3'
miRNA:   3'- -CGACU---ACU----CCGGCu--ACGUCgCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 93748 0.67 0.659571
Target:  5'- aGCUG--GAGGCCGcgcggcugccgGCGGCGgCCCg -3'
miRNA:   3'- -CGACuaCUCCGGCua---------CGUCGCgGGGg -5'
6684 3' -59.2 NC_001847.1 + 39850 0.67 0.660578
Target:  5'- cCUGGaGGcgccagcGGCCGcaagcuUGcCGGCGCCCCCg -3'
miRNA:   3'- cGACUaCU-------CCGGCu-----AC-GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 72183 0.67 0.660578
Target:  5'- cGCUGGUGcagucGGUCG-UGguGCcggaucuGCCCCCc -3'
miRNA:   3'- -CGACUACu----CCGGCuACguCG-------CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 60080 0.67 0.661586
Target:  5'- cGCUaGUGAuGGCCGuguucguggGCAGC-CUCCCg -3'
miRNA:   3'- -CGAcUACU-CCGGCua-------CGUCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 74103 0.67 0.661586
Target:  5'- cGCUGGUGc--CCGggGCGGCcGCgCCCg -3'
miRNA:   3'- -CGACUACuccGGCuaCGUCG-CGgGGG- -5'
6684 3' -59.2 NC_001847.1 + 54664 0.67 0.661586
Target:  5'- cGCUGcgGAacggggagcgcGGCCcgacggcgGcgGCGGCGCCCgCg -3'
miRNA:   3'- -CGACuaCU-----------CCGG--------CuaCGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 88233 0.67 0.661586
Target:  5'- cGCcgGAgccGAGGCCGgcGCGGCGCggggCgCCg -3'
miRNA:   3'- -CGa-CUa--CUCCGGCuaCGUCGCG----GgGG- -5'
6684 3' -59.2 NC_001847.1 + 53864 0.67 0.661586
Target:  5'- cGCUGgcGGcGCCGAccgccgcggggGCGGCggGCCCCCc -3'
miRNA:   3'- -CGACuaCUcCGGCUa----------CGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 31377 0.67 0.661586
Target:  5'- -----cGGGuGCCGgcGCAGuCGUCCCCg -3'
miRNA:   3'- cgacuaCUC-CGGCuaCGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 27057 0.67 0.661586
Target:  5'- --aGA-GAGGCCc--GCAGC-CCCCCg -3'
miRNA:   3'- cgaCUaCUCCGGcuaCGUCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 53225 0.67 0.661586
Target:  5'- aGCUGAacgcccucaUGGuGcGCUGGcUGCGGCGCCgCCu -3'
miRNA:   3'- -CGACU---------ACU-C-CGGCU-ACGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 134190 0.67 0.661586
Target:  5'- -----cGGGuGCCGgcGCAGuCGUCCCCg -3'
miRNA:   3'- cgacuaCUC-CGGCuaCGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 101788 0.67 0.662594
Target:  5'- uGCUGAgggUGAGGUgCGAggggcccaccgucacGCAGCGCgCCgCCa -3'
miRNA:   3'- -CGACU---ACUCCG-GCUa--------------CGUCGCG-GG-GG- -5'
6684 3' -59.2 NC_001847.1 + 48726 0.67 0.665614
Target:  5'- aGCggaagGAcGAGGCggCGGUGCAguaugacucagccgcGCGCCCgCCg -3'
miRNA:   3'- -CGa----CUaCUCCG--GCUACGU---------------CGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 51247 0.67 0.668633
Target:  5'- cGCUGcc--GGCCGAugaaagugacgagaUGCAGCGCCgCg -3'
miRNA:   3'- -CGACuacuCCGGCU--------------ACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 121674 0.67 0.671649
Target:  5'- cGCUG-UGGGGugcggcCCGAgcaGguGCGCgCCCg -3'
miRNA:   3'- -CGACuACUCC------GGCUa--CguCGCGgGGG- -5'
6684 3' -59.2 NC_001847.1 + 46770 0.67 0.671649
Target:  5'- cGCgc--GGGGCCGGUccGCcGCGCCCgCg -3'
miRNA:   3'- -CGacuaCUCCGGCUA--CGuCGCGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.