miRNA display CGI


Results 81 - 100 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 11391 0.67 0.691671
Target:  5'- ------aGGGCCGcugcuaucAUGCAGCGCCgCCg -3'
miRNA:   3'- cgacuacUCCGGC--------UACGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 122834 0.67 0.691671
Target:  5'- cGCaGGUG-GGCCGucaaguagucuUGCGGgGCaCCCCc -3'
miRNA:   3'- -CGaCUACuCCGGCu----------ACGUCgCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 114159 0.67 0.691671
Target:  5'- uGCcGAUuggGAGGCCuaGUGCGcGCGCCCgCu -3'
miRNA:   3'- -CGaCUA---CUCCGGc-UACGU-CGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 43302 0.67 0.681679
Target:  5'- gGCUGcgGAGuaCGAaGCGcGCGCUgCCg -3'
miRNA:   3'- -CGACuaCUCcgGCUaCGU-CGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 1129 0.67 0.681679
Target:  5'- cGCUGGcgagaccgcccgUGAcuguacuGCCGAUGCcgcgcGCGCUCCCa -3'
miRNA:   3'- -CGACU------------ACUc------CGGCUACGu----CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 26291 0.67 0.681679
Target:  5'- cGCUGcggcaaGUGAcucgcGGCgagucgUGggGCAGCGUCCCCa -3'
miRNA:   3'- -CGAC------UACU-----CCG------GCuaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 21867 0.67 0.681679
Target:  5'- uGgUGcgGGGGCUGcgGC-GCGCUgCCg -3'
miRNA:   3'- -CgACuaCUCCGGCuaCGuCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 30910 0.67 0.681679
Target:  5'- --cGGUGAGGCgcgcgccggCGGUGCGGCggagGCCUUCg -3'
miRNA:   3'- cgaCUACUCCG---------GCUACGUCG----CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 92168 0.67 0.671649
Target:  5'- aGCgaacccGGGCCGGccgGCGGCccGCCCCCc -3'
miRNA:   3'- -CGacuac-UCCGGCUa--CGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 46770 0.67 0.671649
Target:  5'- cGCgc--GGGGCCGGUccGCcGCGCCCgCg -3'
miRNA:   3'- -CGacuaCUCCGGCUA--CGuCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 121674 0.67 0.671649
Target:  5'- cGCUG-UGGGGugcggcCCGAgcaGguGCGCgCCCg -3'
miRNA:   3'- -CGACuACUCC------GGCUa--CguCGCGgGGG- -5'
6684 3' -59.2 NC_001847.1 + 51247 0.67 0.668633
Target:  5'- cGCUGcc--GGCCGAugaaagugacgagaUGCAGCGCCgCg -3'
miRNA:   3'- -CGACuacuCCGGCU--------------ACGUCGCGGgGg -5'
6684 3' -59.2 NC_001847.1 + 48726 0.67 0.665614
Target:  5'- aGCggaagGAcGAGGCggCGGUGCAguaugacucagccgcGCGCCCgCCg -3'
miRNA:   3'- -CGa----CUaCUCCG--GCUACGU---------------CGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 101788 0.67 0.662594
Target:  5'- uGCUGAgggUGAGGUgCGAggggcccaccgucacGCAGCGCgCCgCCa -3'
miRNA:   3'- -CGACU---ACUCCG-GCUa--------------CGUCGCG-GG-GG- -5'
6684 3' -59.2 NC_001847.1 + 88233 0.67 0.661586
Target:  5'- cGCcgGAgccGAGGCCGgcGCGGCGCggggCgCCg -3'
miRNA:   3'- -CGa-CUa--CUCCGGCuaCGUCGCG----GgGG- -5'
6684 3' -59.2 NC_001847.1 + 54664 0.67 0.661586
Target:  5'- cGCUGcgGAacggggagcgcGGCCcgacggcgGcgGCGGCGCCCgCg -3'
miRNA:   3'- -CGACuaCU-----------CCGG--------CuaCGUCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 27057 0.67 0.661586
Target:  5'- --aGA-GAGGCCc--GCAGC-CCCCCg -3'
miRNA:   3'- cgaCUaCUCCGGcuaCGUCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 134190 0.67 0.661586
Target:  5'- -----cGGGuGCCGgcGCAGuCGUCCCCg -3'
miRNA:   3'- cgacuaCUC-CGGCuaCGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 53864 0.67 0.661586
Target:  5'- cGCUGgcGGcGCCGAccgccgcggggGCGGCggGCCCCCc -3'
miRNA:   3'- -CGACuaCUcCGGCUa----------CGUCG--CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 53225 0.67 0.661586
Target:  5'- aGCUGAacgcccucaUGGuGcGCUGGcUGCGGCGCCgCCu -3'
miRNA:   3'- -CGACU---------ACU-C-CGGCU-ACGUCGCGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.