miRNA display CGI


Results 61 - 80 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 33213 0.68 0.648472
Target:  5'- cGCgGGUGGcucggcuuggcgccGcGCCGGgcgccGCGGCGCCUCCg -3'
miRNA:   3'- -CGaCUACU--------------C-CGGCUa----CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 33917 0.68 0.611087
Target:  5'- uGCUcGggGAGGCUGGccuccccgugUGCAG-GCCCgCCg -3'
miRNA:   3'- -CGA-CuaCUCCGGCU----------ACGUCgCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 34371 0.78 0.188083
Target:  5'- cGCUGAUGcGGCCGAaacaacgGCGGCcGCCgCCg -3'
miRNA:   3'- -CGACUACuCCGGCUa------CGUCG-CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 34495 0.68 0.645441
Target:  5'- gGCgagGAUgcgagcGAGGCCGAcGCGgacggcgccggcgauGCGCCgCCCg -3'
miRNA:   3'- -CGa--CUA------CUCCGGCUaCGU---------------CGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 34642 0.71 0.446752
Target:  5'- cGCgcc-GAGGCCGA-GCGGCGCgCCg -3'
miRNA:   3'- -CGacuaCUCCGGCUaCGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 36663 0.69 0.551055
Target:  5'- cGCaGGUGGGGgcuUCGAUGC-GC-CCCCCg -3'
miRNA:   3'- -CGaCUACUCC---GGCUACGuCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 37059 0.69 0.569917
Target:  5'- gGCUGggGGcGGCUGGUGCAcGCgguacugGCCCgCCu -3'
miRNA:   3'- -CGACuaCU-CCGGCUACGU-CG-------CGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 37951 0.66 0.759763
Target:  5'- cGCUGAUcgcGAGcaaGCCGcuacGCAGCGCgCCg -3'
miRNA:   3'- -CGACUA---CUC---CGGCua--CGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 38328 0.66 0.750295
Target:  5'- cGC-GcgGucGCCGccGCugcGCGCCCCCc -3'
miRNA:   3'- -CGaCuaCucCGGCuaCGu--CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 39577 0.67 0.715435
Target:  5'- uUUGGUG-GGCCaGGuggccccagcgcugcUGCGGCGCggCCCCa -3'
miRNA:   3'- cGACUACuCCGG-CU---------------ACGUCGCG--GGGG- -5'
6684 3' -59.2 NC_001847.1 + 39850 0.67 0.660578
Target:  5'- cCUGGaGGcgccagcGGCCGcaagcuUGcCGGCGCCCCCg -3'
miRNA:   3'- cGACUaCU-------CCGGCu-----AC-GUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 42452 0.66 0.759763
Target:  5'- cGCUcGUG-GGCagagGGUGCGuuccGCGCCCCg -3'
miRNA:   3'- -CGAcUACuCCGg---CUACGU----CGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 42542 0.69 0.590942
Target:  5'- uGCUcGGUGAGGgCGAggacgcgGCcGCGUCCUCc -3'
miRNA:   3'- -CGA-CUACUCCgGCUa------CGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 42719 0.68 0.631293
Target:  5'- aUUGAUGcuuaccGGCgCGAguucggGCuGGCGCCCCCc -3'
miRNA:   3'- cGACUACu-----CCG-GCUa-----CG-UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 43302 0.67 0.681679
Target:  5'- gGCUGcgGAGuaCGAaGCGcGCGCUgCCg -3'
miRNA:   3'- -CGACuaCUCcgGCUaCGU-CGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 43597 0.73 0.346674
Target:  5'- aGCgUGGcgcUGGGGCCGGUGCuGGCcacgGCCCUCa -3'
miRNA:   3'- -CG-ACU---ACUCCGGCUACG-UCG----CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 44950 0.68 0.621186
Target:  5'- gGCUGGgcGAcGGCgCGccGCAGCaGCCCCg -3'
miRNA:   3'- -CGACUa-CU-CCG-GCuaCGUCG-CGGGGg -5'
6684 3' -59.2 NC_001847.1 + 45532 0.67 0.701613
Target:  5'- cGCgGAcGGGGCCGugccgcGCAGCGCgUUCa -3'
miRNA:   3'- -CGaCUaCUCCGGCua----CGUCGCGgGGG- -5'
6684 3' -59.2 NC_001847.1 + 46770 0.67 0.671649
Target:  5'- cGCgc--GGGGCCGGUccGCcGCGCCCgCg -3'
miRNA:   3'- -CGacuaCUCCGGCUA--CGuCGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 47405 0.72 0.386375
Target:  5'- gGCUccGUGAGGCCGuggGCGGCGUCUgCg -3'
miRNA:   3'- -CGAc-UACUCCGGCua-CGUCGCGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.