miRNA display CGI


Results 101 - 120 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 58534 0.66 0.769121
Target:  5'- --cGAaGAGGCCGccGCGGUcuucGCCgCCg -3'
miRNA:   3'- cgaCUaCUCCGGCuaCGUCG----CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 58735 0.69 0.551055
Target:  5'- cGCggGGUGcccccGCCGcgGCccccGGCGCCCCCc -3'
miRNA:   3'- -CGa-CUACuc---CGGCuaCG----UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 59058 0.68 0.611087
Target:  5'- uGgUGGUGAGGCgGcagcucgGCuggcGCGCCCUCg -3'
miRNA:   3'- -CgACUACUCCGgCua-----CGu---CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 60080 0.67 0.661586
Target:  5'- cGCUaGUGAuGGCCGuguucguggGCAGC-CUCCCg -3'
miRNA:   3'- -CGAcUACU-CCGGCua-------CGUCGcGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66165 0.68 0.621186
Target:  5'- cGCUGucucccGGGCUGgcGcCGGcCGCCCCCu -3'
miRNA:   3'- -CGACuac---UCCGGCuaC-GUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66244 0.67 0.701613
Target:  5'- gGCUGcacucuccGGGCCGAgcaugcucGCGGCGaCUCCCg -3'
miRNA:   3'- -CGACuac-----UCCGGCUa-------CGUCGC-GGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66907 0.73 0.35749
Target:  5'- cGCUGAUGcaAGcgugcuugcggccccGCCGcgGCccguGCGCCCCCu -3'
miRNA:   3'- -CGACUAC--UC---------------CGGCuaCGu---CGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 66978 0.67 0.711499
Target:  5'- cGCUGcaGAGGCgGGcUGCGGCGCggCgCCg -3'
miRNA:   3'- -CGACuaCUCCGgCU-ACGUCGCG--GgGG- -5'
6684 3' -59.2 NC_001847.1 + 68603 0.69 0.551055
Target:  5'- aGUUGGcuacGGCgCGGUcGCuGCGCCCCCa -3'
miRNA:   3'- -CGACUacu-CCG-GCUA-CGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 68921 0.7 0.492942
Target:  5'- cGCUGAgguucggcgcgGcGGCCGcggGCuGCGCCUCCa -3'
miRNA:   3'- -CGACUa----------CuCCGGCua-CGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 69882 0.68 0.638368
Target:  5'- cGCUGcgGAccGGCCGcggGCccggguggcggaaaAGCGCCgCCCc -3'
miRNA:   3'- -CGACuaCU--CCGGCua-CG--------------UCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 72183 0.67 0.660578
Target:  5'- cGCUGGUGcagucGGUCG-UGguGCcggaucuGCCCCCc -3'
miRNA:   3'- -CGACUACu----CCGGCuACguCG-------CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 72609 0.66 0.769121
Target:  5'- cGCUGcu--GGCCGcacgGCAcGUGCCgCCCg -3'
miRNA:   3'- -CGACuacuCCGGCua--CGU-CGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 72689 0.71 0.474189
Target:  5'- cCUGcUGAGGCCGGggagaGCGGCcGCCCg- -3'
miRNA:   3'- cGACuACUCCGGCUa----CGUCG-CGGGgg -5'
6684 3' -59.2 NC_001847.1 + 73018 0.68 0.621186
Target:  5'- cGCgGAaccAGGCCGcgGCAGCGgCCgCg -3'
miRNA:   3'- -CGaCUac-UCCGGCuaCGUCGCgGGgG- -5'
6684 3' -59.2 NC_001847.1 + 73411 0.66 0.740726
Target:  5'- cGUUGcagGAucGGCUGAuUGCcgAGCGCCCUCu -3'
miRNA:   3'- -CGACua-CU--CCGGCU-ACG--UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 74103 0.67 0.661586
Target:  5'- cGCUGGUGc--CCGggGCGGCcGCgCCCg -3'
miRNA:   3'- -CGACUACuccGGCuaCGUCG-CGgGGG- -5'
6684 3' -59.2 NC_001847.1 + 74135 0.67 0.691671
Target:  5'- uGCUGcgcGUGGcGCCGGggcgaaugaugGCGGCGCCUCUc -3'
miRNA:   3'- -CGAC---UACUcCGGCUa----------CGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 74264 0.66 0.731064
Target:  5'- cGCUGcUGGGGCCcgcGCGcGCGCUCgCg -3'
miRNA:   3'- -CGACuACUCCGGcuaCGU-CGCGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 74753 0.7 0.483522
Target:  5'- gGCUGGgagacGcGGUCGgcGC-GCGCCCCCu -3'
miRNA:   3'- -CGACUa----CuCCGGCuaCGuCGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.