miRNA display CGI


Results 121 - 140 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 75617 0.66 0.758821
Target:  5'- cCUGccAUGAGcgcagcgcaccaaGCCGGUGCggccucGGCGCaCCCCc -3'
miRNA:   3'- cGAC--UACUC-------------CGGCUACG------UCGCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 75813 0.69 0.551055
Target:  5'- --cGAUGccGGGCUGGUaCGGCGCCgCCg -3'
miRNA:   3'- cgaCUAC--UCCGGCUAcGUCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 76402 0.69 0.590942
Target:  5'- gGCgccgGGGGCCGcgGCgGGgGCaCCCCg -3'
miRNA:   3'- -CGacuaCUCCGGCuaCG-UCgCG-GGGG- -5'
6684 3' -59.2 NC_001847.1 + 76896 0.67 0.691671
Target:  5'- cCUGAcgGAGGgCGGUcGC-GCGCCgCCg -3'
miRNA:   3'- cGACUa-CUCCgGCUA-CGuCGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 78341 0.68 0.611087
Target:  5'- gGCU--UGGGcGCCGcgGCGGCgaacaGCCCCUc -3'
miRNA:   3'- -CGAcuACUC-CGGCuaCGUCG-----CGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 78857 0.7 0.502445
Target:  5'- aGCUGGUGu-GCucgCGGUGC-GCGCCCUCg -3'
miRNA:   3'- -CGACUACucCG---GCUACGuCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 79002 0.66 0.731064
Target:  5'- uGCUGAgccaccccgGAGGCUGc-GCGGCGUgCaCCg -3'
miRNA:   3'- -CGACUa--------CUCCGGCuaCGUCGCGgG-GG- -5'
6684 3' -59.2 NC_001847.1 + 80529 0.71 0.464948
Target:  5'- cGCUGAaaguagcGGGCgGAuUGCucgcccacGGCGCCCCCg -3'
miRNA:   3'- -CGACUac-----UCCGgCU-ACG--------UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 80730 0.71 0.42896
Target:  5'- gGCcGccGAGGCCaaccGcgGCGGCGCCCgCCu -3'
miRNA:   3'- -CGaCuaCUCCGG----CuaCGUCGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 80865 0.67 0.711499
Target:  5'- cGCguc-GAGGCCGuccgGCAGCacGCCCgCg -3'
miRNA:   3'- -CGacuaCUCCGGCua--CGUCG--CGGGgG- -5'
6684 3' -59.2 NC_001847.1 + 81015 0.66 0.750295
Target:  5'- cGCggccacuUGcaGCCGGUGCuGCGCCuCCCg -3'
miRNA:   3'- -CGacu----ACucCGGCUACGuCGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 81858 0.71 0.447653
Target:  5'- aGCggcGUGAGGCgGAcgcgcgccugggcgcGCAGCGCCCCg -3'
miRNA:   3'- -CGac-UACUCCGgCUa--------------CGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 82110 0.66 0.750295
Target:  5'- gGCUcgGAgccGAGGcCCGAgcgcGCAGCGgCCgCCg -3'
miRNA:   3'- -CGA--CUa--CUCC-GGCUa---CGUCGCgGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 83594 0.7 0.502445
Target:  5'- cGCUGgcGAGcugcGCCGAcgccuggGCGcCGCCCCCg -3'
miRNA:   3'- -CGACuaCUC----CGGCUa------CGUcGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 84308 0.68 0.598989
Target:  5'- aGCgccccccGGCgCGG-GCAGCGCCCCCc -3'
miRNA:   3'- -CGacuacu-CCG-GCUaCGUCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 84854 0.68 0.648472
Target:  5'- aGCUGGUggaaguagucgugcGAGGCgaccgCGAUGCAGCuaGCUgCCa -3'
miRNA:   3'- -CGACUA--------------CUCCG-----GCUACGUCG--CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 85495 0.66 0.769121
Target:  5'- cGCgGAgaAGGCCGcUGUggucGGCGUCUCCa -3'
miRNA:   3'- -CGaCUacUCCGGCuACG----UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 85770 0.66 0.769121
Target:  5'- cGCcGggGGcagcGGCCGAUGCGGUGCgCgUCg -3'
miRNA:   3'- -CGaCuaCU----CCGGCUACGUCGCG-GgGG- -5'
6684 3' -59.2 NC_001847.1 + 86041 0.73 0.336841
Target:  5'- cGCUGGUugggcgaggcgcugGGGGCCacgGAUGCgAGCGUCCUCg -3'
miRNA:   3'- -CGACUA--------------CUCCGG---CUACG-UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 86300 0.66 0.729122
Target:  5'- cGCgccgcgcGGCCGA---GGCGCCCCCg -3'
miRNA:   3'- -CGacuacu-CCGGCUacgUCGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.